View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6253_low_10 (Length: 300)

Name: NF6253_low_10
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6253_low_10
NF6253_low_10
[»] chr3 (8 HSPs)
chr3 (20-290)||(2833290-2833567)
chr3 (188-287)||(41640822-41640921)
chr3 (190-287)||(4778032-4778129)
chr3 (188-287)||(1045370-1045468)
chr3 (193-287)||(34213151-34213245)
chr3 (190-284)||(26982031-26982125)
chr3 (199-237)||(1762039-1762077)
chr3 (240-286)||(24748359-24748405)
[»] chr2 (4 HSPs)
chr2 (188-285)||(10994430-10994527)
chr2 (189-281)||(29682700-29682792)
chr2 (191-287)||(43411515-43411611)
chr2 (190-284)||(41074563-41074656)
[»] chr1 (10 HSPs)
chr1 (188-287)||(51871201-51871300)
chr1 (194-285)||(25410572-25410663)
chr1 (190-287)||(52372670-52372767)
chr1 (188-279)||(15274345-15274436)
chr1 (191-281)||(13297595-13297685)
chr1 (190-292)||(44503947-44504049)
chr1 (191-285)||(3227649-3227743)
chr1 (190-276)||(21926619-21926704)
chr1 (190-292)||(40799651-40799753)
chr1 (191-257)||(9644372-9644438)
[»] chr7 (8 HSPs)
chr7 (188-287)||(33743470-33743569)
chr7 (191-280)||(12258376-12258465)
chr7 (186-290)||(33888612-33888716)
chr7 (190-284)||(46028440-46028534)
chr7 (190-251)||(26557857-26557918)
chr7 (190-290)||(23176896-23176996)
chr7 (205-285)||(40188186-40188266)
chr7 (253-293)||(26556465-26556505)
[»] chr8 (10 HSPs)
chr8 (190-287)||(42032733-42032830)
chr8 (188-287)||(2074800-2074899)
chr8 (188-262)||(36650452-36650526)
chr8 (190-287)||(41927020-41927117)
chr8 (199-287)||(32073929-32074017)
chr8 (190-290)||(24604837-24604937)
chr8 (191-292)||(42241221-42241322)
chr8 (205-287)||(34152016-34152098)
chr8 (188-278)||(26000097-26000187)
chr8 (212-281)||(8172247-8172316)
[»] chr6 (3 HSPs)
chr6 (188-287)||(9755662-9755761)
chr6 (205-278)||(52009-52082)
chr6 (209-292)||(9557361-9557444)
[»] chr4 (8 HSPs)
chr4 (188-272)||(48309635-48309719)
chr4 (190-292)||(30251390-30251492)
chr4 (205-287)||(50655072-50655154)
chr4 (190-287)||(24065097-24065194)
chr4 (190-287)||(23012338-23012435)
chr4 (205-292)||(4866794-4866881)
chr4 (205-287)||(45068122-45068204)
chr4 (199-287)||(44616658-44616746)
[»] chr5 (6 HSPs)
chr5 (194-292)||(33861926-33862023)
chr5 (190-255)||(41650525-41650590)
chr5 (190-287)||(27639446-27639543)
chr5 (191-292)||(3465295-3465396)
chr5 (186-227)||(33672060-33672101)
chr5 (231-286)||(33672896-33672946)
[»] scaffold0329 (1 HSPs)
scaffold0329 (190-284)||(18426-18520)
[»] scaffold0042 (1 HSPs)
scaffold0042 (191-251)||(83251-83311)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 2833567 - 2833290
Alignment:
Q  20 aggacatggctagggttggttattatccgtcccttgcgcacccctagatatcgtgttcgaaacttcaaaaatatagtttnnnnnnn---gttgtaaatac 116  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||| ||||||           | |||||||||    
T  2833567 aggacatggctagggttggttattatccgtcccttgcgcatctctagataccgtattcgaaacttcaaaaaaatagttaaaaaaaaaaaggtgtaaatac 2833468  T
Q  117 atattttcttctcacattagggaaaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtggacagagtgaaactcttagct 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2833467 atattttcttctcgcattagggaaaaatgcgagaagaaaataaagttcttcatctttttgtgaggcaatgtcagtggtagatagagtgaaactcttagct 2833368  T
Q  217 tggaagtggttcatggctaagtgccctg----ctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 290  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2833367 tggaagtggttcatggctaagtgccctgctagctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 2833290  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 41640822 - 41640921
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||| ||||||||| |||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41640822 cagtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgcagcccgtcct 41640921  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 4778032 - 4778129
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| ||||| |||||||||| |||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4778032 gtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgcagcccgtcct 4778129  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 1045468 - 1045370
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||| || || ||||||| |||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||| ||||||    
T  1045468 cagtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttgttctctctatgag-gggaggtgcagctcgtcct 1045370  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 34213151 - 34213245
Alignment:
Q  193 gtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    | ||||| |||||||||||||||||    
T  34213151 gtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccgtcct 34213245  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 26982125 - 26982031
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgc-tctctctatgagtgggaggtgcagcccgt 284  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||  || || ||||||||||||| ||||||||    
T  26982125 gtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatc-atgagtgggaggttcagcccgt 26982031  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 1762077 - 1762039
Alignment:
Q  199 agagtgaaactcttagcttggaagtggttcatggctaag 237  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1762077 agagcgaaactcttagcttggaagtggttcatggctaag 1762039  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 24748405 - 24748359
Alignment:
Q  240 ccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcc 286  Q
    |||||||||||| || ||||||| |||||||||||||||| ||||||    
T  24748405 ccctgctagttcatgttctctctttgagtgggaggtgcagtccgtcc 24748359  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 10994430 - 10994527
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 285  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10994430 cagtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttcccgttctctctatgagtgggaggtgcagcccgtc 10994527  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 29682700 - 29682792
Alignment:
Q  189 agtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 281  Q
    ||||||||| ||||| ||||||||||||| ||||||||||  |||||||  |||||||| | |||| ||||||| ||||||||||||||||||    
T  29682700 agtggtggatagagttaaactcttagcttagaagtggttccaggctaagcaccctgctaatccctgttctctctttgagtgggaggtgcagcc 29682792  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 43411515 - 43411611
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    ||||||| |||| ||||||||||||||| ||||| ||| |||||||||| |||||||| |||||| ||    |||||||||||||||||||||||||    
T  43411515 tggtggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcct 43411611  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 41074656 - 41074563
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgt 284  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||| |||| | || |  |||||||| |||||||||||||    
T  41074656 gtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctag-tccttcacttttcatgagtggaaggtgcagcccgt 41074563  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 51871201 - 51871300
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||| ||| | |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51871201 cagtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttcctgttctctctatgagtgggaggtgcagcccgtcct 51871300  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 25410663 - 25410572
Alignment:
Q  194 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 285  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  25410663 tggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccgtc 25410572  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 52372670 - 52372767
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| |||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||| ||| ||||    
T  52372670 gtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcct 52372767  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 15274345 - 15274436
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcag 279  Q
    |||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  15274345 cagtggtggacagagtgaaacttttagcttgtaagtgattcctagctaagtgtcctgctagttcatgttctctctatgagtgggaggtgcag 15274436  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 13297595 - 13297685
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 281  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||    |||||||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgcagcc 13297685  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 44504049 - 44503947
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 289  Q
    |||||||| | |||||| |||||||||||||||||||||||| ||||||| | || ||||||||||||| |  |||||||||||||||||| |||||| |    
T  44504049 gtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtccttt 44503950  T
Q  290 gct 292  Q
    |||    
T  44503949 gct 44503947  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 3227743 - 3227649
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 285  Q
    ||||||||| ||| |||||||||||||| ||||| ||| ||| ||||||||||||||||  ||| ||||||||||||||||| ||||| ||||||    
T  3227743 tggtggacatagttaaactcttagcttgaaagtgattcctggttaagtgccctgctagtctctgttctctctatgagtgggaagtgcaacccgtc 3227649  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 21926619 - 21926704
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtg 276  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||    ||||||||||||||    
T  21926619 gtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 40799651 - 40799753
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 289  Q
    |||||||| |||||||||||||| ||||| |||| |||| | |||||||||  ||||||||| |||||| |  |||||||||||||||||| |||||| |    
T  40799651 gtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtccttt 40799750  T
Q  290 gct 292  Q
    |||    
T  40799751 gct 40799753  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 9644372 - 9644438
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctc 257  Q
    ||||||| |||| ||||||||| | ||||||||||||| | |||||||| ||| ||||||| |||||    
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctc 9644438  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 33743470 - 33743569
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  33743470 cagtggtggacagagttaaaatcttagcttgaaagtggttcttggctaagtgccctgctagtccctgttctctctatgagtgggaggtgcaacccgtcct 33743569  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 12258376 - 12258465
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagc 280  Q
    ||||||| ||||| |||||||||||||| ||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgcagc 12258465  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 33888612 - 33888716
Alignment:
Q  186 gtcagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 285  Q
    |||||||||||| |||||| ||||||||| ||||||||||||   ||||||||||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  33888612 gtcagtggtggatagagtggaactcttagattggaagtggtttcgggctaagtgccctgctagttcatattctctctatgagtggaaggtgcaacccgtc 33888711  T
Q  286 ctatg 290  Q
    |||||    
T  33888712 ctatg 33888716  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 46028534 - 46028440
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgt 284  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| || |||  | ||| |||||||||||||||||||    
T  46028534 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtttctactccttttataagtgggaggtgcagcccgt 46028440  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 26557918 - 26557857
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 251  Q
    |||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  26557918 gtggtggacagagttaaacttttagcttggtagtggctcctggctaagtgccctgctagttc 26557857  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 23176996 - 23176896
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 289  Q
    |||||| | |||||||||||||||||||||||| ||||| | || ||||| | ||||||||| ||| ||    |||||| ||||||||||||||||||||    
T  23176996 gtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctat 23176897  T
Q  290 g 290  Q
    |    
T  23176896 g 23176896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 40188266 - 40188186
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtc 285  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||    |||||| ||||||||||| ||||    
T  40188266 aaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcgtc 40188186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 26556505 - 26556465
Alignment:
Q  253 tgctctctctatgagtgggaggtgcagcccgtcctatgctt 293  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  26556505 tgctccctctatgagtgggaggtgcagcccatcctgtgctt 26556465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 42032733 - 42032830
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||  | ||||||||||||||||| ||||||||    
T  42032733 gtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcct 42032830  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 2074899 - 2074800
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||| | ||| |||||||||| || ||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2074899 cagtggtggatatagttaaactcttagttttgaagttgttccaggctaagtgccctgctagttcctgttctctctatgagtgggaggtgcaacccgtcct 2074800  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 36650526 - 36650452
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctct 262  Q
    |||||||||||||||| ||||||||||||||| ||||||||  ||||||||| | ||||||||||||||||||||    
T  36650526 cagtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttcctgctctctct 36650452  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 41927020 - 41927117
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| |||| ||| ||||||||||||||||||||| |||||||||||| ||| | |||||||| | |||||||||||||| |||| ||| ||||    
T  41927020 gtggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcct 41927117  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 32074017 - 32073929
Alignment:
Q  199 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||| ||||||||| ||  |||||||||| ||| |||||||||||||  | ||||||||||||| ||||||||||||    
T  32074017 agagtgaaactcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcct 32073929  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 24604837 - 24604937
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 289  Q
    |||||||| |||| ||||||||||| ||| ||||||||| |||||||||| ||||||||||  | ||||    |||||||||||||||||||| ||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagcccatcctat 24604936  T
Q  290 g 290  Q
    |    
T  24604937 g 24604937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 42241322 - 42241221
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 290  Q
    ||||||| | || ||||||||||||||||||||||||| |||| ||| || || ||||||||||| ||  |  ||||||||||||||| |||||||| ||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtg 42241223  T
Q  291 ct 292  Q
    ||    
T  42241222 ct 42241221  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 34152098 - 34152016
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||||||||||| |||||||| |||||   ||||||||| || |  |||||||||||||||| ||| ||||    
T  34152098 aaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaacccatcct 34152016  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 26000097 - 26000187
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgca 278  Q
    ||||||||||  |||| ||||| |||||||| |||||||||  | |||||| || || ||||  ||| |||||||||||||||||||||||    
T  26000097 cagtggtggatggagttaaacttttagcttgaaagtggttctagactaagttccatgttagtctctgttctctctatgagtgggaggtgca 26000187  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 8172316 - 8172247
Alignment:
Q  212 tagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcc 281  Q
    |||||||||| |||||| |||| ||||| | |||||| || |||||  ||||||||||||| ||||||||    
T  8172316 tagcttggaaatggttcgtggcgaagtgtcatgctagctcttgctccttctatgagtgggaagtgcagcc 8172247  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 9755761 - 9755662
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||| |||||||||||||| ||||||||||||   ||||||||||||||||||||| || |||||| |||| || |||||||||||||||||    
T  9755761 cagtggtggacaaagtgaaactcttagtttggaagtggtttcgggctaagtgccctgctagttcatgttctctccatgaatgagaggtgcagcccgtcct 9755662  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 52009 - 52082
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgca 278  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||| ||| || | |||||||||||||||||    
T  52009 aaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgca 52082  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 9557444 - 9557361
Alignment:
Q  209 tcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgct 292  Q
    |||||||||||||||| ||| || ||||||| |||||||| |||||| ||    ||||||||||||||||||||||||| ||||    
T  9557444 tcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgct 9557361  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 48309719 - 48309635
Alignment:
Q  188 cagtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtggga 272  Q
    |||||||||| ||||||||||||||||||||||||| ||||  ||||||||  |||||||||||||| |||||||||||||||||    
T  48309719 cagtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttcctgttctctctatgagtggga 48309635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 30251492 - 30251390
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctat 289  Q
    |||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||  ||||| |||||| |  |||||||||||||| |||| ||||| |    
T  30251492 gtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtgtagccggtccttt 30251393  T
Q  290 gct 292  Q
    |||    
T  30251392 gct 30251390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 50655154 - 50655072
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||| | || |||||||||||||||| || |||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcct 50655072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 24065194 - 24065097
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| | |   ||||| |||||||| || ||||||||    
T  24065194 gtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaacccgtcct 24065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 23012435 - 23012338
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||   |||||||| |||| ||    |||| ||||||||||||| ||||||    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcct 23012338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 4866794 - 4866881
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgct 292  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| | ||| ||    |||||||||||||||| || ||||| ||||    
T  4866794 aaactcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcctgtgct 4866881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 45068204 - 45068122
Alignment:
Q  205 aaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||| | ||    ||||| |||||||||| ||||||||    
T  45068204 aaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcct 45068122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 44616746 - 44616658
Alignment:
Q  199 agagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||| ||| ||||||||||| |||||| ||||||||||| ||| ||||| ||| ||| ||  | |||||||||||||||| ||||||||    
T  44616746 agagagaagctcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgcaacccgtcct 44616658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 33861926 - 33862023
Alignment:
Q  194 tggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatgct 292  Q
    |||| ||||||||||| || |||||||||||| ||  |||||||||||||| ||||||||||||| |  |||||||||||||| |||||||||| ||||    
T  33861926 tggatagagtgaaact-ttggcttggaagtggctcccggctaagtgccctggtagttcctgctcttttcatgagtgggaggtgtagcccgtcctttgct 33862023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 41650525 - 41650590
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgc 255  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  41650525 gtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgc 41650590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 27639543 - 27639446
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcct 287  Q
    |||||||| ||||  ||| |||||||||||||||||||||||||||| || ||||||||||| ||| ||    |||||| ||||||||| ||||||||    
T  27639543 gtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaacccgtcct 27639446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 3465396 - 3465295
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcctatg 290  Q
    ||||||| |||| ||||||||||||||||||||| ||| |||| ||| |  || ||||||||||| ||  | |||||||||||||||| ||| |||| ||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaacccatcctgtg 3465297  T
Q  291 ct 292  Q
    ||    
T  3465296 ct 3465295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 33672060 - 33672101
Alignment:
Q  186 gtcagtggtggacagagtgaaactcttagcttggaagtggtt 227  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33672060 gtcagtggtggacaaagttaaactcttagcttggaagtggtt 33672101  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 33672896 - 33672946
Alignment:
Q  231 ggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgtcc 286  Q
    |||||||||||||||||||||||     |||||||||||||||||||| |||||||    
T  33672896 ggctaagtgccctgctagttcct-----ctctatgagtgggaggtgcaacccgtcc 33672946  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 18520 - 18426
Alignment:
Q  190 gtggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttcctgctctctctatgagtgggaggtgcagcccgt 284  Q
    |||||||| |||| ||||||| ||| ||| ||||| |||  ||||||||||||||||||||||||| ||    |||||||||||||||| |||||    
T  18520 gtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgt 18426  T

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Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 83311 - 83251
Alignment:
Q  191 tggtggacagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctagttc 251  Q
    ||||||| | ||| ||||||||||||||||||||||||||| | ||||| |||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttc 83251  T

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