View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6253_low_13 (Length: 239)
Name: NF6253_low_13
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6253_low_13 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 42204210 - 42204099
Alignment:
| Q |
128 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204210 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42204111 |
T |
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| Q |
228 |
aatgcattgtcc |
239 |
Q |
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|||||||||||| |
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| T |
42204110 |
aatgcattgtcc |
42204099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 42213078 - 42212967
Alignment:
| Q |
128 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213078 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42212979 |
T |
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| Q |
228 |
aatgcattgtcc |
239 |
Q |
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|||||||||||| |
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| T |
42212978 |
aatgcattgtcc |
42212967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 42204328 - 42204237
Alignment:
| Q |
10 |
atcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
101 |
Q |
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| T |
42204328 |
atcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
42204237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 42213196 - 42213105
Alignment:
| Q |
10 |
atcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
101 |
Q |
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| T |
42213196 |
atcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
42213105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 42219130 - 42219050
Alignment:
| Q |
21 |
tagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
101 |
Q |
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| T |
42219130 |
tagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagttcgattattgttattgtttgaag |
42219050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 42219021 - 42218920
Alignment:
| Q |
133 |
agcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaa-ttgaagcaatg |
231 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
42219021 |
agcatatcttccgaagaaagagtggtcttctcaacaaaaacagccatggaaatgtaaaaagatacattcaaaaca---tcttctcaaagttgaagcaatg |
42218925 |
T |
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| Q |
232 |
cattg |
236 |
Q |
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||||| |
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| T |
42218924 |
cattg |
42218920 |
T |
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