View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6253_low_4 (Length: 492)
Name: NF6253_low_4
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6253_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 61 - 437
Target Start/End: Complemental strand, 9131047 - 9130671
Alignment:
| Q |
61 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9131047 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9130948 |
T |
|
| Q |
161 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
9130947 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccg |
9130848 |
T |
|
| Q |
261 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
360 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9130847 |
cttaaaggggagcccttggttattctatgaatggagttgggattcgggagaatgattgaagaggagtctagctgcagcagatcagtggtccgtctggatg |
9130748 |
T |
|
| Q |
361 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgctgc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9130747 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgctgc |
9130671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 61 - 437
Target Start/End: Complemental strand, 9122940 - 9122575
Alignment:
| Q |
61 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122940 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9122841 |
T |
|
| Q |
161 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122840 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtc-----------gatgagatcaaagtgttatctttgaaatggagtcttagccg |
9122752 |
T |
|
| Q |
261 |
tttaaaggggagccctcggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatg |
360 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9122751 |
tttaaaggggagcccttggttattctatgaatggagttgagatccgggagaatgattgaagaggagtcgagctgcagcagatcagtggtccgtctggatg |
9122652 |
T |
|
| Q |
361 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgctgc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9122651 |
tcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgctgc |
9122575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 9123086 - 9123039
Alignment:
| Q |
15 |
atcagttactcttgtagatattactgccaatgtctttatttgatgttt |
62 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9123086 |
atcagttactcttatagttattactgccaatgtctttatttgatgttt |
9123039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 9131193 - 9131146
Alignment:
| Q |
15 |
atcagttactcttgtagatattactgccaatgtctttatttgatgttt |
62 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9131193 |
atcagttactcttatagttattactgccaatgtctttatttgatgttt |
9131146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 77 - 435
Target Start/End: Complemental strand, 24524885 - 24524526
Alignment:
| Q |
77 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
|
| Q |
177 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagccct |
24524686 |
T |
|
| Q |
277 |
cggttattctatgaatggagttgggatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc-tggttt |
375 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24524685 |
tggttattctatgaatggagttgggattcgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttcttggttt |
24524586 |
T |
|
| Q |
376 |
tgggggctgttggaagtggttgctgctttctgtccgctgaattgttggtgctgttctgct |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24524585 |
tgggggctgttggaagtggttgctgctttctgtcggctgaattgttggtgctgttctgct |
24524526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 114 - 276
Target Start/End: Complemental strand, 10323301 - 10323138
Alignment:
| Q |
114 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
|
| Q |
213 |
tattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
276 |
Q |
| |
|
|||||||||||| ||||| |||| || | | |||| |||||| ||| |||||||||||||||| |
|
|
| T |
10323201 |
tattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 10323126 - 10323079
Alignment:
| Q |
322 |
aggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc |
369 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
10323126 |
aggagtccagctgaagcagataagtggtccgtctggatgtcatttttc |
10323079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University