View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6253_low_9 (Length: 311)
Name: NF6253_low_9
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6253_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 10473784 - 10473495
Alignment:
| Q |
17 |
atataaatatgactcagctggttctttgaagtgtccactttttcgatgaagtgttaacattttgacaataca------agggttgagtttttattagtga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
10473784 |
atataaatatgactcagctggttctttgaagtgtccactttttcgatgaagtgttaacattttgacattacagttacaagggttgagtttttattagtga |
10473685 |
T |
|
| Q |
111 |
tgatacaaagaagatattacaaatttacaatataatcctatactaaatcaaatgtaccatgacaacttgctttatctacaacatgatctaaagacactct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10473684 |
tgatacaaagaagatattacaaatttacaatataatcctatactaaatcaaatgtaccatgacaacttgctttatctacaacatgatctaaagacactct |
10473585 |
T |
|
| Q |
211 |
tcttagtggatttactattaaactataaatttatgtgtgtggatttttaagttataataatttatgaacttgtctttttcgtcttttctt |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10473584 |
tcttagtggatttacaattaaactataaatttatgtgtgtggatttttaagttataataatttatgaagttgtctttttcgtcttttctt |
10473495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 40122956 - 40123008
Alignment:
| Q |
48 |
tgtccactttttcgatgaagtgttaacattttgacaatacaagggttgagttt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
40122956 |
tgtccattttttcgttgaagtgttcacattttgacattacaagggtttagttt |
40123008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University