View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_15 (Length: 260)
Name: NF6254_high_15
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 3569295 - 3569062
Alignment:
| Q |
11 |
caaagggtccgcaataataattaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatataggacaatcattgggc |
110 |
Q |
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| T |
3569295 |
caaagggtccgcaataataactaacactggtttatgagacggaaagcaactcttgtgcccgagttaccttgtgcactccaatataggacaatcattgggc |
3569196 |
T |
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| Q |
111 |
acttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggaca |
210 |
Q |
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| T |
3569195 |
acttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttcttgttgtcgtaatttctgtttttgcttcttggaca |
3569096 |
T |
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| Q |
211 |
aaaccagtgtgaatagatcttccaccgccttttg |
244 |
Q |
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| T |
3569095 |
aaaccagcgtgaatagatcttccactgccttttg |
3569062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 34215439 - 34215601
Alignment:
| Q |
74 |
ttaccttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggact |
173 |
Q |
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| T |
34215439 |
ttaccgtgagcattccaatataggacagtcattgggcacttggagatgaagcac-ccct-------tgagcaggttctatacggcggtttcccaaggaca |
34215530 |
T |
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| Q |
174 |
tgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttg |
244 |
Q |
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| T |
34215531 |
tgttgttgtctgaatttcagtttttgcttcttggacaaaaccggtgtgaatggatcttccgctgccttttg |
34215601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 34215364 - 34215396
Alignment:
| Q |
18 |
tccgcaataataattaacactggtttatgagac |
50 |
Q |
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| T |
34215364 |
tccgcaataataattaacaatggtttatgagac |
34215396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 17368122 - 17368047
Alignment:
| Q |
140 |
tgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaacc |
215 |
Q |
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| T |
17368122 |
tgagcgggttttatacggcggtttcccaaggacatgttgttgtcgcaatttctgtttttgcttcttggacaaaacc |
17368047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 11213285 - 11213139
Alignment:
| Q |
87 |
tccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgggttctatacggcggtttcctaaggacttgtcgttgtcgta |
186 |
Q |
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| T |
11213285 |
tccaatataggacaatcattgggcacttggagatgaa--------tcaccccttgaacgggttctataccgcagtttcccaaggaca---cgttgtcgca |
11213197 |
T |
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| Q |
187 |
atttctgtttttgcttcttggacaaaaccagtgtgaatagatcttccaccgccttttg |
244 |
Q |
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| T |
11213196 |
atttctgtttttgcttcttggataaaaccggtgtgattggatctcccgctgccttttg |
11213139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 35222780 - 35222602
Alignment:
| Q |
53 |
aaagcaactcttgtgcccgagtt------accttgtgcactccaatataggacaatcattgggcacttggagatgaagcactccctcactccctgagcgg |
146 |
Q |
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| T |
35222780 |
aaagcaactcttgtgtccgagttgctaatacctcgagcattccaatataggacaatcattgagcatttggagatgag--------tcaccccttgagcgg |
35222689 |
T |
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| Q |
147 |
gttctatacggcggtttcctaaggacttgtcgttgtcgtaatttctgtttttgcttcttggacaaaaccagtgtgaatagatcttcc |
233 |
Q |
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| T |
35222688 |
gttcaatatggcggcttcccaagaatttgttgttgccgcaatttctgtttttgcttcttggacaaaacaagagtaaatggatcttcc |
35222602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 23050381 - 23050337
Alignment:
| Q |
20 |
cgcaataataattaacactggtttatgagacggaaagcaactctt |
64 |
Q |
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| T |
23050381 |
cgcaataataattaacaatggcttaagagacagaaagcaactctt |
23050337 |
T |
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