View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6254_high_16 (Length: 251)
Name: NF6254_high_16
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 53615869 - 53616058
Alignment:
| Q |
1 |
tgaggtttacctgatgttttagattgtttttcaagaccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615869 |
tgaggtttacctgatgttttagattgtttttcaagaccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctt |
53615968 |
T |
|
| Q |
101 |
taccttagagaatgtaccttctcctattgtcctgccaagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615969 |
taccttagagaatgtaccttctcctattgtcctgccaagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
53616058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University