View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_19 (Length: 242)
Name: NF6254_high_19
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 8335487 - 8335630
Alignment:
| Q |
80 |
ccttaaaaattaaggcggataagaatttaatcagtattacgtgaaattatgactagatacatacatagcttagtacctataaatacctgaatgttgttga |
179 |
Q |
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| T |
8335487 |
ccttaaaaattaaggcggataagaatttaatcagtattacgtgtaattatgactagatac----atagcttagtatctataaatacctgaatgttgttga |
8335582 |
T |
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| Q |
180 |
cactatattgtaagaaaatcagaaagctaatagtaagatggaaaagtt |
227 |
Q |
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| T |
8335583 |
cactatattgtaagaaaatcagaaagctaatagtaagatggaaaagtt |
8335630 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 8335415 - 8335450
Alignment:
| Q |
8 |
agattattctcgaagactaatatgaatattataatg |
43 |
Q |
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| T |
8335415 |
agattattctcgaagactaatatgaatattataatg |
8335450 |
T |
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