View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_2 (Length: 483)
Name: NF6254_high_2
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
| Q |
31 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac |
130 |
Q |
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| T |
30975250 |
atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac |
30975349 |
T |
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| Q |
131 |
atcaaatttcgaagg |
145 |
Q |
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| T |
30975350 |
atcaaatttcaaagg |
30975364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 30975414 - 30975456
Alignment:
| Q |
161 |
actctcaattattcaaaatagccaaccaactatacacactata |
203 |
Q |
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| T |
30975414 |
actcacaattgttcaaaatagccaaccaactatacacattata |
30975456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
| Q |
31 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat |
93 |
Q |
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| T |
19909688 |
atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat |
19909626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 25569341 - 25569268
Alignment:
| Q |
368 |
ccccagcactcaattaatttacacatgaaatctgtaatccactgtctgaaactatatttgatcgatccacaaca |
441 |
Q |
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| T |
25569341 |
ccccagcactccactaatctacacaagaaatttgcaatccactgtctgaaactatatttgatcaatccacaaca |
25569268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 15856545 - 15856587
Alignment:
| Q |
161 |
actctcaattattcaaaatagccaaccaactatacacactata |
203 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
15856545 |
actcacaattgttcaaaatagccaaccaactatacacattata |
15856587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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