View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_21 (Length: 235)
Name: NF6254_high_21
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 17850775 - 17850570
Alignment:
| Q |
16 |
tgtgtataaaaatatattggtccagatattgggatatattgagtgtgaataatggtatatttgtctgtttaataattttgtcatgggtacgcagagttgt |
115 |
Q |
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| T |
17850775 |
tgtgtataaaaaaatattggtccagatattgggatatgttgggtgtgaataatggtatctttgtctgtttaataattttgtcatgggtacgcagagttgt |
17850676 |
T |
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| Q |
116 |
tgggttccctttaccacacttatttgtcctttatgtatatttgcagacaaacaaatctaatgcaattatttgttcgtaaaaaattaaagaaaagaagaac |
215 |
Q |
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| T |
17850675 |
tgggttccctttaccacacttatttgtcctctatgtatatttgcagacaaacaaatctaatgcaattatttgttcataaaaaattaaagaaaagaagaac |
17850576 |
T |
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| Q |
216 |
ctaatg |
221 |
Q |
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|||||| |
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| T |
17850575 |
ctaatg |
17850570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 17841575 - 17841370
Alignment:
| Q |
16 |
tgtgtataaaaatatattggtccagatattgggatatattgagtgtgaataatggtatatttgtctgtttaataattttgtcatgggtacgcagagttgt |
115 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17841575 |
tgtgtataaaaaaatattcgtccagatattgggatatattgggtgtgaataatggtatctttgtctgtttaataattttgtcataggtacgcagagttgt |
17841476 |
T |
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| Q |
116 |
tgggttccctttaccacacttatttgtcctttatgtatatttgcagacaaacaaatctaatgcaattatttgttcgtaaaaaattaaagaaaagaagaac |
215 |
Q |
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||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
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| T |
17841475 |
tgggttccctttaccacgcttaattgtcctttatgtatacttgcagacaaacaaatntaatgcaattatttgttcatgaaaaattaaagaaaagaagaac |
17841376 |
T |
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| Q |
216 |
ctaatg |
221 |
Q |
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|||||| |
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| T |
17841375 |
ctaatg |
17841370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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