View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_3 (Length: 449)
Name: NF6254_high_3
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_3 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 1141425 - 1140986
Alignment:
| Q |
10 |
ataattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnngtaaatatatgcaaaatcaattgaattgcattaactttg |
109 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1141425 |
ataattctaggtatccctgaattcattacataaataattgaatatgatcaatgaaaaaaaagtaaatatatgcaaaatcaattgaattgcattaactttg |
1141326 |
T |
|
| Q |
110 |
gtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgcttcc |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141325 |
gtgcaaatgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgcttcc |
1141226 |
T |
|
| Q |
210 |
aaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactatgttggatgggctccacctcttgaccaatcaacccaagtcaaagtcctg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141225 |
aaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctcttgaccaatcaacccaagtcaaagtcctg |
1141126 |
T |
|
| Q |
310 |
ttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataacatcctgggtgacaatattttttgaagacagaaaaat |
409 |
Q |
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|||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141125 |
ttagaattcctcttccaaaatttgatacttaccaatgttggcaaataatgttcatcactataacatcctgggtgacaatattttttgaagacagaaaaat |
1141026 |
T |
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| Q |
410 |
atggcttgtcggagacgatatgaaccgcaagataacgatc |
449 |
Q |
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| T |
1141025 |
atggcttgtcggagacgatacaaaccgcaagataacgatc |
1140986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 1137966 - 1137525
Alignment:
| Q |
12 |
aattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnn----gtaaatatatgcaaaatcaattgaattgcattaactt |
107 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||| |
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| T |
1137966 |
aattctaggtatccctgaattcattacatgaatcattgaatgtgatcaatgaagaaaaaaaaagtacatctatgcaaaatcaattgaattgcattaactt |
1137867 |
T |
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| Q |
108 |
tggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtgctt |
207 |
Q |
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||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1137866 |
tggggcaaatgtgagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgtttttccattgtactcacaagtgctt |
1137767 |
T |
|
| Q |
208 |
ccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactatgttggatgggctccacctcttgaccaatcaacccaagtcaaagtcc |
307 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
1137766 |
ccaaatcttaatctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccaccttttgaccaatcaacccaagttaaagtcc |
1137667 |
T |
|
| Q |
308 |
tgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataacatcctgggtgacaatattttttgaagacagaaaa |
407 |
Q |
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|||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||| |
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| T |
1137666 |
tgttagaattcctcttccaaaatttgatacttaccaatgttggcaaataatgttcatcactaatacatcttgggtgacaatattttttgaacatagaaaa |
1137567 |
T |
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| Q |
408 |
atatggcttgtcggagacgatatgaaccgcaagataacgatc |
449 |
Q |
| |
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|||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
1137566 |
atatggcttgtcggagacaatacgaactgcaagataacgatc |
1137525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 22841354 - 22841455
Alignment:
| Q |
264 |
tggatgggctccacctcttgaccaatcaacccaagtcaaagtcctgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttca |
363 |
Q |
| |
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|||||||| |||||| ||||||| ||||||||||||||| | || || | ||| ||||| | ||| || || ||||| || |||||||||||||| ||| |
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| T |
22841354 |
tggatggggtccaccctttgaccagtcaacccaagtcaaacttctatttgtattactcttccaaaacttaatgctaactaaagttggcaaataatgctca |
22841453 |
T |
|
| Q |
364 |
tc |
365 |
Q |
| |
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|| |
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| T |
22841454 |
tc |
22841455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 83 - 433
Target Start/End: Original strand, 31266268 - 31266618
Alignment:
| Q |
83 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
182 |
Q |
| |
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||||||||||||||||||| |||||||| ||||| | |||| || ||||||||| |||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
31266268 |
aaaatcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgt |
31266367 |
T |
|
| Q |
183 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactatgttggatgggctccacctctt |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||| | |||||| | ||||||| || |
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| T |
31266368 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccacctttt |
31266467 |
T |
|
| Q |
283 |
gaccaatcaacccaagtcaaagtcctgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataacatcctgggt |
382 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||||| | ||| ||||| ||||||| |||||||| || |||||||||||||| ||| |||| |
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| T |
31266468 |
gaccaatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggt |
31266567 |
T |
|
| Q |
383 |
gacaatattttttgaagacagaaaaatatggcttgtcggagacgatatgaa |
433 |
Q |
| |
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|||||| |||||||| | |||||||||| ||||||||| || ||||||| |
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| T |
31266568 |
cacaatagtttttgaacatagaaaaatataacttgtcggaaactatatgaa |
31266618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 83 - 449
Target Start/End: Original strand, 54474217 - 54474583
Alignment:
| Q |
83 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
182 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| |||||| | ||||||||| | || || ||||||||||||||||||||| |||||||||||||| |
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| T |
54474217 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
54474316 |
T |
|
| Q |
183 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactatgttggatgggctccacctctt |
282 |
Q |
| |
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| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| | |||| | || |||||| |||||| || |
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| T |
54474317 |
ccttccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgccattaaattttgatggatgtcgtccaccattt |
54474416 |
T |
|
| Q |
283 |
gaccaatcaacccaagtcaaagtcctgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataacatcctgggt |
382 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
54474417 |
gaccaatcaacccaagtcaaagttctgttagaattcctctcccaaaatttgatactaatcaatgttggcaaatagtgttcatcactataacatgaagggt |
54474516 |
T |
|
| Q |
383 |
gacaatattttttgaagacagaaaaatatggcttgtcggagacgatatgaaccgcaagataacgatc |
449 |
Q |
| |
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|| |||||||| || ||||||||||| || |||||| || |||||||| ||||| |||||||| |
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|
| T |
54474517 |
tgcagtattttttaaacttagaaaaatatgtctcgtcggatactatatgaactgcaaggtaacgatc |
54474583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 83 - 419
Target Start/End: Original strand, 48323126 - 48323459
Alignment:
| Q |
83 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | | | || | ||||||||| |||| | ||| |||||||||||||||||||||| ||| ||| |
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| T |
48323126 |
aaaatcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatgt |
48323222 |
T |
|
| Q |
183 |
ctttccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactatgttggatgggctccacctctt |
282 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||| || ||||||| ||||||| || |
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|
| T |
48323223 |
ccttccattgtgctcacaagtgcttccaaacctcaacctctccaaaaattcagtagtcacatcttttcctgtaaaacttgaaggatggggtccacctttt |
48323322 |
T |
|
| Q |
283 |
gaccaatcaacccaagtcaaagtcctgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataacatcctgggt |
382 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| ||||| ||||||| | | |||| || ||||||| ||||||||||||||||| ||| | || |
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|
| T |
48323323 |
gaccaatcaacccaagttaaagtcctattagaatttctcttcccaaattcgttgctaataaaagttggcaggtaatgttcatcactatagcatggagtgt |
48323422 |
T |
|
| Q |
383 |
gacaatattttttgaagacagaaaaatatggcttgtc |
419 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||||| |
|
|
| T |
48323423 |
tgcaatactttttgaacatagaaaaatatgtcttgtc |
48323459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 49735455 - 49735556
Alignment:
| Q |
274 |
ccacctcttgaccaatcaacccaagtcaaagtcctgttagaattcctctttccaaatttgattctaaccaatgttggcaaataatgttcatcactataac |
373 |
Q |
| |
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||||| |||||||| ||||||||||||||| |||| || ||||| | | ||||| || || |||||||| |||||||| |||||||||||| ||||| |
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| T |
49735455 |
ccaccccttgaccagtcaacccaagtcaaactcctatttgaatttccttccccaaactttatgctaaccaaagttggcaagtaatgttcatcagcataac |
49735554 |
T |
|
| Q |
374 |
at |
375 |
Q |
| |
|
|| |
|
|
| T |
49735555 |
at |
49735556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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