View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6254_high_4 (Length: 416)

Name: NF6254_high_4
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6254_high_4
NF6254_high_4
[»] chr1 (8 HSPs)
chr1 (1-406)||(35900588-35900990)
chr1 (5-350)||(44614154-44614499)
chr1 (5-348)||(17809940-17810280)
chr1 (1-208)||(11542858-11543065)
chr1 (5-214)||(44146462-44146671)
chr1 (109-350)||(44783965-44784203)
chr1 (15-143)||(44794102-44794230)
chr1 (256-332)||(11542783-11542859)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-357)||(182109-182462)
scaffold0017 (5-344)||(171026-171362)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-344)||(27430-27766)
[»] chr5 (1 HSPs)
chr5 (5-348)||(29505800-29506143)
[»] chr3 (1 HSPs)
chr3 (5-353)||(26729771-26730116)
[»] chr2 (4 HSPs)
chr2 (5-214)||(29227281-29227490)
chr2 (5-214)||(29340580-29340789)
chr2 (258-355)||(29218239-29218336)
chr2 (258-355)||(29331538-29331635)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 35900588 - 35900990
Alignment:
Q  1 cttggttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatct 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  35900588 cttggttggacttgtcaaacaacaagctctatgtgaaaattccaattggaacgcaactgcagacatttaacgcttcatgttttgaagaaaattctaatct 35900687  T
Q  101 ctgtggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900688 ctgcggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaa 35900787  T
Q  201 gcattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactcca 300  Q
    |||||||||||||||         |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  35900788 gcattatacatgagt---ggggggataggattcttcattggcttcgttggcttggcaggctcaatatttttactaccatcttggagagaaacttgctcca 35900884  T
Q  301 aattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgtataccttgctagttgctctaagttggatgaatatgatgggcaggta 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35900885 aattcttgaacacattgatattgaaaatcttcttgtggaggaagcagtaaatgtataccttgctagttgctctaagttggatgaatatgatgggcaggta 35900984  T
Q  401 cctatg 406  Q
    ||||||    
T  35900985 cctatg 35900990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 44614154 - 44614499
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||  |||||| ||| || ||||||||||||| ||| |||||||  |||||||||||| ||||||||| |||||| |||||||||    
T  44614154 gttggatttgtcaaacaatcagctctgtggaaacattccaattggaacgcagctgcagagctttaatgcttcaagttttgaaggaaattcaaatctctgt 44614253  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcagga---gatgacaatttaatatttttggaag 201  Q
    |||||||| ||||||| ||| |||||||  ||||| ||| | ||| ||||||||| ||||||||||||||||   ||||| |||| ||||||||||||||    
T  44614254 ggagaaccccttgatagaaaatgtccagaagaagatccatcaaaacatcaagtgccaacaactgatgcaggagatgatgataattcaatatttttggaag 44614353  T
Q  202 cattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaa 301  Q
    |||||||||||||          ||||||||||||  ||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||     
T  44614354 cattatacatgag---catggggataggattcttcactggtttcgttggcttggtcggctcaatgttgttactaccatcttggagagaaacttactccag 44614450  T
Q  302 attcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaa 350  Q
    |||||||||||| |||||||||||| || || |||||||||||||||||    
T  44614451 attcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaa 44614499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 17810280 - 17809940
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||  |||||||||| |||||||||||||||| ||| || |||||||||||||||||  |||| |||||||||| |||||| |||    
T  17810280 gttggatttgtcaaacaatcagctctatggaaaaattccaattggaacgcagcttcagacatttaatgcttccagtttcgaagaaaattttaatctttgt 17810181  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatca-agtgcaaacaactgatgcaggagatgacaatttaatatttttggaagca 203  Q
    |||||||||||||||| ||  ||||| || ||||| ||  | ||||   | ||||| ||||||  ||||||||||||| || | ||| ||||| ||| ||    
T  17810180 ggagaaccacttgataaaatatgtcctggagaagatcccgc-aaatccgagagtgccaacaacaaatgcaggagatgagaactcaatgtttttagaaaca 17810082  T
Q  204 ttatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaat 303  Q
    |||||||||||           | || |||||   ||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||    
T  17810081 ttatacatgagcatggggc---ttgggttctttactggtttcgttggcttggtaggctcaatattgttactaccgtcttggagagatacttactccagat 17809985  T
Q  304 tcttgaacacattgatattgaaaatcttcttgtggtggaagcagt 348  Q
    |||||||||| |||||||||||| |||||  ||||||||||||||    
T  17809984 tcttgaacactttgatattgaaagtcttcacgtggtggaagcagt 17809940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11543065 - 11542858
Alignment:
Q  1 cttggttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatct 100  Q
    ||||||||||||||||||||||  | || ||||| ||| |||||||||||| ||| || ||||||||||  |||||| ||||||||| ||||| ||||||    
T  11543065 cttggttggacttgtcaaacaatcaactatatggaaaagttccaattggaaggcagcttcagacatttagcgcttcaagttttgaaggaaattataatct 11542966  T
Q  101 ctgtggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaa 200  Q
     ||||||||||||||||||||||| ||||| || |||||  |||| ||| |||||||||  ||||||||||||| ||||||||||| |||||||||||||    
T  11542965 ttgtggagaaccacttgatataaaatgtcctggagaagattcaccaaaacatcaagtgccgacaactgatgcagaagatgacaattcaatatttttggaa 11542866  T
Q  201 gcattata 208  Q
    ||||||||    
T  11542865 gcattata 11542858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 44146462 - 44146671
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    ||||||||||||||| ||   |||||||||||||||||||||||| |  ||  ||||||  |||||  |||||| |||||||| ||||||||||||||||    
T  44146462 gttggacttgtcaaataatcggctctatgggaaaattccaattgggacacagttgcagagctttaacacttcatattttgaaggaaattctaatctctgt 44146561  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    ||||||||||||||||  || |||||||| ||||||||| | ||| |||||||||  || |||||||||||||||||||||| ||||||||| |||||||    
T  44146562 ggagaaccacttgataataaatgtccaggagaagagccatcaaaacatcaagtgccgactactgatgcaggagatgacaattcaatatttttagaagcat 44146661  T
Q  205 tatacatgag 214  Q
    | ||||||||    
T  44146662 tctacatgag 44146671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 350
Target Start/End: Complemental strand, 44784203 - 44783965
Alignment:
Q  109 aaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcattata 208  Q
    |||||||| ||||||| |||||||| ||||||||||| ||| ||||||||| ||||| |||||| ||||||||||||| | ||||||||||||| |||||    
T  44784203 aaccacttcatataaaatgtccaggtgaagagccaccaaaacatcaagtgccaacaattgatgctggagatgacaattcagtatttttggaagcgttata 44784104  T
Q  209 catgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaattcttg 308  Q
    ||||||          |||||||||||   | | |||||||| ||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  44784103 catgag---catggggataggattctttactagtttcgttggttttataggctcaatattgttactaccatcttggagagaaacctactccaaattcttg 44784007  T
Q  309 aacacattgatattgaaaatcttcttgtggtggaagcagtaa 350  Q
    || || || ||||||| |||| || | |||||||||||||||    
T  44784006 aatactttaatattgagaatcatcatctggtggaagcagtaa 44783965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 44794230 - 44794102
Alignment:
Q  15 tcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgtggagaaccac 114  Q
    ||||||||  ||||||||||  ||||||||||||||| ||| ||||||||||| || |||||| ||||||||| |||||||||||||||||||||||| |    
T  44794230 tcaaacaatgagctctatggagaaattccaattggaacgcagctgcagacattcaacgcttcaagttttgaaggaaattctaatctctgtggagaacccc 44794131  T
Q  115 ttgatataaagtgtccaggcgaagagcca 143  Q
    |||||| ||| || ||||  |||||||||    
T  44794130 ttgatagaaaatgcccagaagaagagcca 44794102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 11542859 - 11542783
Alignment:
Q  256 taggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttc 332  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||  | || ||||||| |||||||    
T  11542859 taggctcaatatcgttactgccatcttggagagaaacctactccaaattcttgaatgctttaatattgagaatcttc 11542783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 182109 - 182462
Alignment:
Q  1 cttggttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatct 100  Q
    ||||||||||||||||| ||||  | ||| ||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  182109 cttggttggacttgtcatacaatcatctcaatgggaaaattccaattggaacgcagctgcagacatttaacgcttcaagttttgaagaaaattctaatct 182208  T
Q  101 ctgtggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaa 200  Q
     |||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||||||| |||||| |||||||||||||| |||| | |||||||||||    
T  182209 atgtggataaccacttgatataaagtgtccatgcgaagagacaccaaaacatcaagtgccaacaacggatgcaggagatgaaaattcagtatttttggaa 182308  T
Q  201 gcattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactcca 300  Q
    |||||||| |||||          ||||||||||||  ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  182309 gcattatatatgag---catggggataggattcttcactggtttcattggcttggtaggctcaatattgttactaccatcttggagagaaacttactcca 182405  T
Q  301 aattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgtata 357  Q
     |||||||||||| |||||||||||| || || |||||||||||| || ||||||||    
T  182406 gattcttgaacactttgatattgaaagtcatcatgtggtggaagccgtgaatgtata 182462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 171026 - 171362
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||  |||||||||||||| ||||| |||||| ||| |||||||||||||| |||||| |||||||||  ||||| |||||||||    
T  171026 gttggatttgtcaaacaatcagctctatgggaaagttccagttggaacgcagctgcagacatttaacgcttcaagttttgaagggaattcaaatctctgt 171125  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    |||||||| ||||||| ||| || ||||| ||||| ||| | |||   ||||||| ||||||||||||||||||||| |||| ||||||||| |||||||    
T  171126 ggagaaccccttgatagaaaatgcccaggagaagaaccagcaaaaccacaagtgccaacaactgatgcaggagatgaaaattcaatattttttgaagcat 171225  T
Q  205 tatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaatt 304  Q
    |||| |||||          ||||||||||||  ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  171226 tatatatgag---catggggataggattcttcactggtttcgttggtttggtaggctcaatattgttactaccatcttggagagaaacctactccaaatt 171322  T
Q  305 cttgaacacattgatattgaaaatcttcttgtggtggaag 344  Q
    |||||| || ||  |||||| ||| ||| |||||||||||    
T  171323 cttgaatactttactattgagaattttcatgtggtggaag 171362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 27766 - 27430
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||  |||||||||||||| ||||| |||||| ||| |||||||||||||| |||||| |||||||||  ||||| |||||||||    
T  27766 gttggatttgtcaaacaatcagctctatgggaaagttccagttggaacgcagctgcagacatttaacgcttcaagttttgaagggaattcaaatctctgt 27667  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    |||||||| ||||||| ||| || ||||| ||||| ||| | |||   ||||||| ||||||||||||||||||||| |||| ||||||||| |||||||    
T  27666 ggagaaccccttgatagaaaatgcccaggagaagaaccagcaaaaccacaagtgccaacaactgatgcaggagatgaaaattcaatattttttgaagcat 27567  T
Q  205 tatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaatt 304  Q
    |||| |||||          ||||||||||||  ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27566 tatatatgag---catggggataggattcttcactggtttcgttggtttggtaggctcaatattgttactaccatcttggagagaaacctactccaaatt 27470  T
Q  305 cttgaacacattgatattgaaaatcttcttgtggtggaag 344  Q
    |||||| || ||  |||||| ||| ||| |||||||||||    
T  27469 cttgaatactttactattgagaattttcatgtggtggaag 27430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 29506143 - 29505800
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||  |||| ||||| |||||||||||||||| ||| |||||||| ||||  |||||| ||||||||| |||| |||||||||||    
T  29506143 gttggatttgtcaaacaatcagctttatggaaaaattccaattggaacgcagctgcagacttttagcgcttcaagttttgaaggaaatcctaatctctgt 29506044  T
Q  105 ggagaaccacttgatataaagtgtccagg---cgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaag 201  Q
    ||||| |||||||||||||| ||||||||    |||||||| || ||| ||||||||| || |||||||||||||||| ||| || ||||||||||||||    
T  29506043 ggagagccacttgatataaaatgtccaggagaagaagagccgccaaaacatcaagtgccaataactgatgcaggagattacagttcaatatttttggaag 29505944  T
Q  202 cattatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaa 301  Q
    |||||||||||||           |||||||||||  |   || ||||||||  |||| |||||||| || |||||||||||||||||||| || |||||    
T  29505943 cattatacatgag---catggggctaggattcttcactacttttgttggctttatagggtcaatattgttcctaccatcttggagagaaacctattccaa 29505847  T
Q  302 attcttgaacacattgatattgaaaatcttcttgtggtggaagcagt 348  Q
    |||||||||  | |||||||||||| | ||| |||||||||||||||    
T  29505846 attcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt 29505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 26729771 - 26730116
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||||||||   |||||||||||| ||||||| |||||| ||  ||||||  ||||||||  ||||||||| || ||||||  ||||||||    
T  26729771 gttggatttgtcaaacaatctgctctatgggaagattccaactggaatacagttgcagagttttaatgccgcatgttttggaggaaattccgatctctgt 26729870  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    ||||||||||||| |||||| |||||||| ||||||||| |  || ||||||||| ||||||  || ||||| | || |||| ||||||||||||||| |    
T  26729871 ggagaaccacttggtataaaatgtccaggagaagagccaaccgaacatcaagtgccaacaacaaattcaggaaacgagaattcaatatttttggaagctt 26729970  T
Q  205 tatacatgagtnnnnnnnnnataggattcttcgttggcttcgttggcttggtaggctcaatatttttactaccatcttggagagaaacttactccaaatt 304  Q
    ||||||||||          ||||||||||||  | | |||||||||||||||||||||||| | ||| || | |||||||||||||||||||||| |||    
T  26729971 tatacatgag---catggggataggattcttcactagtttcgttggcttggtaggctcaataatgttaatatcgtcttggagagaaacttactccagatt 26730067  T
Q  305 cttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatg 353  Q
    ||||||||| ||||| ||||||  |||| ||||||||||||||| ||||    
T  26730068 cttgaacaccttgatcttgaaagccttcatgtggtggaagcagtgaatg 26730116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 29227490 - 29227281
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||| ||||  | |||||||| ||||||||||||||||  ||  ||||||| |||||||||||| ||||||| | |||||| || || |||    
T  29227490 gttggatttgtcacacaatcaactctatggaaaaattccaattggaacacagttgcagacctttaatgcttcaagttttgatggaaattccaacctttgt 29227391  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    ||||| || ||||||| ||| |||||||| ||||||| | | |||   ||||||| ||||||||||| |||||||||||||| ||||||| |||||||||    
T  29227390 ggagatccccttgatagaaaatgtccaggagaagagcaatcaaaaccacaagtgccaacaactgatgtaggagatgacaattcaatatttctggaagcat 29227291  T
Q  205 tatacatgag 214  Q
    | ||||||||    
T  29227290 tctacatgag 29227281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 29340789 - 29340580
Alignment:
Q  5 gttggacttgtcaaacaacaagctctatgggaaaattccaattggaatgcaactgcagacatttaatgcttcatgttttgaagaaaattctaatctctgt 104  Q
    |||||| |||||| ||||  | |||||||| ||||||||||||||||  ||  ||||||| |||||||||||| ||||||| | |||||| || || |||    
T  29340789 gttggatttgtcacacaatcaactctatggaaaaattccaattggaacacagttgcagacctttaatgcttcaagttttgatggaaattccaacctttgt 29340690  T
Q  105 ggagaaccacttgatataaagtgtccaggcgaagagccaccgaaatatcaagtgcaaacaactgatgcaggagatgacaatttaatatttttggaagcat 204  Q
    ||||| || ||||||| ||| |||||||| ||||||| | | |||   ||||||| ||||||||||| |||||||||||||| ||||||| |||||||||    
T  29340689 ggagatccccttgatagaaaatgtccaggagaagagcaatcaaaaccacaagtgccaacaactgatgtaggagatgacaattcaatatttctggaagcat 29340590  T
Q  205 tatacatgag 214  Q
    | ||||||||    
T  29340589 tctacatgag 29340580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 29218336 - 29218239
Alignment:
Q  258 ggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgta 355  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||||||||  |  | ||||||| |||| || |||| |||||||||| ||||||    
T  29218336 ggctcaatattgttactaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagtgaatgta 29218239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 29331635 - 29331538
Alignment:
Q  258 ggctcaatatttttactaccatcttggagagaaacttactccaaattcttgaacacattgatattgaaaatcttcttgtggtggaagcagtaaatgta 355  Q
    ||||||||||| |||||||| ||||||| |||||| |||||||||||||||||  |  | ||||||| |||| || |||| |||||||||| ||||||    
T  29331635 ggctcaatattgttactaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagtgaatgta 29331538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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