View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_high_6 (Length: 387)
Name: NF6254_high_6
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_high_6 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 14004 - 13646
Alignment:
| Q |
13 |
aaggactagacatgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagccaaagc |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14004 |
aaggactagacatgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagacaaagc |
13905 |
T |
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| Q |
113 |
cacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaactacattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13904 |
cacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaacttcattc |
13805 |
T |
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| Q |
213 |
acacatgccataacagatgaaccatcttcatcctcacatgtttgctgttcacaagtgataacgatgctctcacccctgatgctactgttgggacctagaa |
312 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||| |
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| T |
13804 |
acacatgccataacagatgaaccaccttcatcttcacatgtttgctgttcacaagtgataacgatgctctcacccctaatgctattattggtacttagaa |
13705 |
T |
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| Q |
313 |
agttttctccaaaatagagactttgttgttttctactcaatggtttactttcatagttt |
371 |
Q |
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| T |
13704 |
tgttttctccaaaataaagactttgttgttttctactcagtggtttactttcatagttt |
13646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 42932767 - 42933125
Alignment:
| Q |
13 |
aaggactagacatgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagccaaagc |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42932767 |
aaggactagacatgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagacaaagc |
42932866 |
T |
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| Q |
113 |
cacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaactacattc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42932867 |
cacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaacttcattc |
42932966 |
T |
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| Q |
213 |
acacatgccataacagatgaaccatcttcatcctcacatgtttgctgttcacaagtgataacgatgctctcacccctgatgctactgttgggacctagaa |
312 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || ||||| |
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| T |
42932967 |
acacatgccataacagatgaaccaccttcatcttcacatgtttgctgttcacaagtgataacgatgctctcacccctaatgctattattggtacttagaa |
42933066 |
T |
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| Q |
313 |
agttttctccaaaatagagactttgttgttttctactcaatggtttactttcatagttt |
371 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42933067 |
tgttttctccaaaataaagactttgttgttttctactcagtggtttactttcatagttt |
42933125 |
T |
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