View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6254_low_1 (Length: 684)

Name: NF6254_low_1
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6254_low_1
NF6254_low_1
[»] chr5 (18 HSPs)
chr5 (266-674)||(18739347-18739753)
chr5 (21-161)||(18741011-18741151)
chr5 (153-272)||(18740021-18740139)
chr5 (568-627)||(3174233-3174292)
chr5 (568-618)||(10572772-10572822)
chr5 (568-618)||(32863713-32863763)
chr5 (210-249)||(43299936-43299975)
chr5 (211-285)||(21745004-21745079)
chr5 (568-623)||(19209107-19209162)
chr5 (211-249)||(3173850-3173888)
chr5 (211-285)||(42740858-42740934)
chr5 (436-503)||(3174060-3174125)
chr5 (436-503)||(10572599-10572664)
chr5 (436-503)||(32863544-32863609)
chr5 (568-623)||(23737951-23738006)
chr5 (518-572)||(19209187-19209241)
chr5 (518-572)||(23737872-23737926)
chr5 (210-249)||(32863332-32863372)
[»] scaffold1160 (2 HSPs)
scaffold1160 (405-572)||(2343-2511)
scaffold1160 (214-369)||(2168-2328)
[»] chr8 (23 HSPs)
chr8 (276-572)||(16658596-16658864)
chr8 (405-572)||(1667989-1668149)
chr8 (276-572)||(38521301-38521566)
chr8 (211-368)||(1667823-1667983)
chr8 (436-565)||(6786344-6786474)
chr8 (548-618)||(780362-780434)
chr8 (568-623)||(1668174-1668229)
chr8 (568-623)||(16658889-16658944)
chr8 (568-623)||(38521221-38521276)
chr8 (568-618)||(22432291-22432341)
chr8 (568-618)||(29182575-29182625)
chr8 (436-498)||(22014740-22014800)
chr8 (568-627)||(22014904-22014963)
chr8 (436-503)||(774839-774904)
chr8 (436-503)||(780493-780558)
chr8 (568-618)||(774680-774730)
chr8 (436-503)||(18068471-18068536)
chr8 (436-503)||(22432449-22432514)
chr8 (436-503)||(27576659-27576724)
chr8 (568-611)||(6786507-6786550)
chr8 (518-572)||(43916091-43916145)
chr8 (586-618)||(27576856-27576888)
chr8 (436-503)||(29182733-29182798)
[»] chr4 (27 HSPs)
chr4 (276-572)||(23218295-23218563)
chr4 (405-572)||(45143856-45144016)
chr4 (405-572)||(45152625-45152785)
chr4 (469-572)||(13740327-13740433)
chr4 (568-627)||(13740243-13740302)
chr4 (568-627)||(21355936-21355995)
chr4 (568-639)||(45144041-45144112)
chr4 (568-639)||(45152810-45152881)
chr4 (444-572)||(21355773-21355911)
chr4 (568-623)||(23218215-23218270)
chr4 (568-620)||(54785186-54785238)
chr4 (568-618)||(21604495-21604545)
chr4 (568-618)||(46164366-46164416)
chr4 (568-618)||(47825977-47826027)
chr4 (469-572)||(33754038-33754141)
chr4 (572-618)||(8432980-8433026)
chr4 (436-503)||(54785346-54785411)
chr4 (568-623)||(33753956-33754013)
chr4 (205-249)||(46164758-46164803)
chr4 (436-503)||(8433138-8433203)
chr4 (436-503)||(21604322-21604387)
chr4 (436-503)||(46164524-46164589)
chr4 (436-503)||(47825805-47825870)
chr4 (210-249)||(8433378-8433417)
chr4 (302-369)||(45143774-45143841)
chr4 (302-369)||(45152543-45152610)
chr4 (215-264)||(44504337-44504386)
[»] chr3 (9 HSPs)
chr3 (211-572)||(52893141-52893475)
chr3 (211-572)||(2338889-2339225)
chr3 (568-639)||(52893500-52893571)
chr3 (568-639)||(21239504-21239575)
chr3 (500-572)||(21239407-21239479)
chr3 (568-618)||(9456483-9456533)
chr3 (405-445)||(21239357-21239397)
chr3 (568-623)||(2338811-2338864)
chr3 (436-503)||(9456310-9456375)
[»] chr2 (10 HSPs)
chr2 (405-572)||(3935447-3935607)
chr2 (405-572)||(38978448-38978608)
chr2 (210-313)||(19319306-19319409)
chr2 (568-623)||(3935367-3935422)
chr2 (276-379)||(38978614-38978716)
chr2 (568-618)||(25697567-25697617)
chr2 (568-627)||(32339611-32339672)
chr2 (568-609)||(38978382-38978423)
chr2 (287-367)||(3935624-3935704)
chr2 (436-503)||(25697725-25697790)
[»] scaffold0393 (2 HSPs)
scaffold0393 (406-572)||(11244-11400)
scaffold0393 (568-627)||(11160-11219)
[»] chr1 (18 HSPs)
chr1 (568-618)||(26014536-26014586)
chr1 (211-365)||(26354696-26354848)
chr1 (568-618)||(29599251-29599301)
chr1 (436-498)||(6165193-6165253)
chr1 (436-498)||(16764681-16764741)
chr1 (568-618)||(324748-324798)
chr1 (568-618)||(26355075-26355125)
chr1 (436-498)||(10801713-10801773)
chr1 (568-627)||(10801547-10801608)
chr1 (436-503)||(324575-324640)
chr1 (436-503)||(26354901-26354966)
chr1 (436-503)||(29599409-29599474)
chr1 (568-623)||(16764520-16764577)
chr1 (224-365)||(26014229-26014370)
chr1 (212-254)||(48183914-48183955)
chr1 (213-249)||(324368-324404)
chr1 (568-608)||(6165049-6165089)
chr1 (436-503)||(26014422-26014487)
[»] chr7 (12 HSPs)
chr7 (568-618)||(6472244-6472294)
chr7 (568-618)||(9371876-9371926)
chr7 (568-618)||(21358022-21358072)
chr7 (436-503)||(6472402-6472467)
chr7 (436-503)||(9371703-9371768)
chr7 (210-365)||(21358267-21358420)
chr7 (568-611)||(35012981-35013024)
chr7 (211-249)||(25533963-25534000)
chr7 (211-255)||(6472690-6472735)
chr7 (568-625)||(44660378-44660435)
chr7 (210-249)||(21453188-21453228)
chr7 (436-503)||(35013133-35013198)
[»] chr6 (4 HSPs)
chr6 (568-618)||(32397302-32397352)
chr6 (210-248)||(14125106-14125144)
chr6 (211-365)||(16497452-16497606)
chr6 (436-503)||(32397128-32397193)
[»] scaffold0054 (2 HSPs)
scaffold0054 (436-498)||(2768-2828)
scaffold0054 (568-623)||(2932-2989)
[»] scaffold0285 (2 HSPs)
scaffold0285 (436-497)||(8528-8587)
scaffold0285 (568-623)||(8366-8423)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 266 - 674
Target Start/End: Complemental strand, 18739753 - 18739347
Alignment:
Q  266 aaaaaagaagttatatactggaaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctga 365  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  18739753 aaaaaaaaagttatatactggaaatgacaaaaatacccttc-gtaataataatatttccattttagtctcatttccccttcacgtttctctttcatctga 18739655  T
Q  366 gaaccaagtgagaagtgagaacagagaaagtgaaacggaatccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  18739654 gaaccaagtgagaagtgagaacagagaaagtgaaacggaatccttttcttctcccaagcatagcaaatcgatccaccacc--------gccggtgagccg 18739563  T
Q  466 cgagaccactctcctctttctccatccatcacctccgcgattactctccttcttcttc---aatttagagagctttcttc----atctctctccacaaac 558  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||    ||||||||||||||||    
T  18739562 cgagaccactctcctctttctccatccatcaccgccgcgattactctccttcttcttcttcaatttagagagctttcttccttcatctctctccacaaac 18739463  T
Q  559 cctaattattgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgttgttaattgttaaacctgtt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18739462 cctaattattgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgttgttaattgttaaacctgtt 18739363  T
Q  659 gttctttgcccctttg 674  Q
    |||||||||| |||||    
T  18739362 gttctttgcctctttg 18739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 18741151 - 18741011
Alignment:
Q  21 aggttgatttggctgcaaattaccttgtaatatttacccttaattatgctaattacatcacctataaactaaggcagtgctggtagaaactagaaattaa 120  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18741151 aggttgatttggctgcaaattaccttggaatatttacccttaattatgctaattacatcacctataaactaaggcagtgctggtagaaactagaaattag 18741052  T
Q  121 cttgataattggtggtttttaagctcaaactataaaattta 161  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  18741051 cttgataatcagtggtttttgagctcaaactataaaattta 18741011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 18740139 - 18740021
Alignment:
Q  153 taaaatttatgattttatttccacttcattaatcttcaaggtctaatctatatgtgatcagtggcggaactggggttggcaagggggagccaccgccgcc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18740139 taaaatttatgattttatttccacttcattaatcttcaaggtctaatctatatgtgatcagtggcggaactggggttggcaagggggagccaccgccacc 18740040  T
Q  253 accatcctaaaacaaaaaag 272  Q
     ||||||||||| |||||||    
T  18740039 -ccatcctaaaaaaaaaaag 18740021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 627
Target Start/End: Original strand, 3174233 - 3174292
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 627  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  3174233 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 3174292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 10572772 - 10572822
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  10572772 tgtaatttccttcaattgtgattctgatttgatgattacatgttctttagt 10572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 32863713 - 32863763
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  32863713 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 32863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 43299936 - 43299975
Alignment:
Q  210 tcagtggcggaactggggttggcaagggggagccaccgcc 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43299936 tcagtggcggaactggggttggcaagggggagccaccgcc 43299975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 21745079 - 21745004
Alignment:
Q  211 cagtggcggaactggggt-tggcaagggggagccaccgccgccaccatcct-aaaacaaaaaagaagttatatactg 285  Q
    |||||||||||||||||  ||||||||||||||||||||| || ||||||| |||| |||||| |||||||||||||    
T  21745079 cagtggcggaactggggggtggcaagggggagccaccgccacc-ccatcctaaaaataaaaaaaaagttatatactg 21745004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 19209162 - 19209107
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||| | |||||||| ||| ||||||||||||| |||||||||||    
T  19209162 tgtaatttccttcaaatctgattctgctttaatgattacatgttctttagttgatt 19209107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 3173850 - 3173888
Alignment:
Q  211 cagtggcggaactggggttggcaagggggagccaccgcc 249  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  3173850 cagtggcggaactgggggtggcaagggggagccaccgcc 3173888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 42740934 - 42740858
Alignment:
Q  211 cagtggcggaactggggt-tggcaagggggagccaccgccgccaccatcctaaaaca--aaaaagaagttatatactg 285  Q
    |||||||||||||||||  ||||||||||||||||||||| || ||||||||||| |  ||||| |||||||||||||    
T  42740934 cagtggcggaactggggggtggcaagggggagccaccgccacc-ccatcctaaaaaaagaaaaaaaagttatatactg 42740858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 3174060 - 3174125
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  3174060 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 3174125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 10572599 - 10572664
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  10572599 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 10572664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 32863544 - 32863609
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  32863544 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 32863609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 23737951 - 23738006
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||| | |||||||  ||| ||||||||||||| |||||||||||    
T  23737951 tgtaatttccttcaaatctgattcttctttaatgattacatgttctttagttgatt 23738006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Complemental strand, 19209241 - 19209187
Alignment:
Q  518 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    ||||||| |||| |||||| ||| |||||||||||| ||||||||||| ||||||    
T  19209241 ttcttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaa 19209187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 23737872 - 23737926
Alignment:
Q  518 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    ||||||| |||| |||||| ||| |||||||||||| ||||||||||| ||||||    
T  23737872 ttcttcagtttaaagagctatctgcatctctctccataaaccctaattgttgtaa 23737926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 32863332 - 32863372
Alignment:
Q  210 tcagtggcggaactggggt-tggcaagggggagccaccgcc 249  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  32863332 tcagtggcggaactggggggtggcaagggggagccaccgcc 32863372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 405 - 572
Target Start/End: Original strand, 2343 - 2511
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 503  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  2343 atccttttcttctcccaaccaaagcaaatcgatccaccaccacaccaccgccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 2440  T
Q  504 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  2441 gcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 2511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 369
Target Start/End: Original strand, 2168 - 2328
Alignment:
Q  214 tggcggaact-ggggttggcaagggggagccaccgccgccaccatcctaaaacaaaa-aagaagttatat-actggaaatgacaaaaatacccttcagta 310  Q
    |||||||||| |||| ||| ||||||||||||||||| || |||||||||||  ||| || ||  | ||| ||||||||| ||||||||| |||||| ||    
T  2168 tggcggaactagggggtggtaagggggagccaccgccacc-ccatcctaaaaataaataaaaaaatttatgactggaaattacaaaaatatccttcaata 2266  T
Q  311 ataata---atatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 369  Q
    ||| ||   ||||||||  ||||||||||||||| ||||  |||||||||||||||||||||    
T  2267 atagtactaatatttcctgttcagtctcatttcctcttcccgtttctctttcatctgagaac 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 276 - 572
Target Start/End: Original strand, 16658596 - 16658864
Alignment:
Q  276 ttatatactggaaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtg 375  Q
    ||||||||||||||| ||||||||| |||||| || || ||||||||||  ||||||||||||||| ||||  ||||||||||||||||||| |          
T  16658596 ttatatactggaaattacaaaaatatccttcaatagtactaatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagagc------ 16658689  T
Q  376 agaagtgagaacagagaaagtgaaacggaatccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccact 475  Q
      |||||||||             |||  |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  |||||    
T  16658690 --aagtgagaa-------------acgcgatccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccact 16658764  T
Q  476 ctcctctttctccatccatcacctccgc---gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    |||||| |||||||||||||||| ||||   |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  16658765 ctcctccttctccatccatcaccgccgccgcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 16658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 405 - 572
Target Start/End: Original strand, 1667989 - 1668149
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 503  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  1667989 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 1668078  T
Q  504 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  1668079 gcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 1668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 276 - 572
Target Start/End: Complemental strand, 38521566 - 38521301
Alignment:
Q  276 ttatatactggaaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtg 375  Q
    ||||||| ||||||| ||||||||| |||||| || || ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||| ||||||    
T  38521566 ttatatattggaaattacaaaaatatccttcaatagtactaatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaa-caagtg 38521468  T
Q  376 agaagtgagaacagagaaagtgaaacggaatccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccact 475  Q
    |                    ||||||  |||||||||||||||||| || |||||||||||||||||        |||||||||||||||  |||||||    
T  38521467 a--------------------gaaacgcgatccttttcttctcccaaccaaagcaaatcgatccacca--------ccgccggtgagccgc--gaccact 38521398  T
Q  476 ctcctctttctccatccatca---cctccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    || ||| ||||||||||||||   || ||||||||||||||   || ||||| ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  38521397 cttctccttctccatccatcactgccgccgcgattactctc---ctccttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaa 38521301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 368
Target Start/End: Original strand, 1667823 - 1667983
Alignment:
Q  211 cagtggcggaactggggt-tggcaagggggagccaccgccgccaccatcctaaaacaaaaaagaagtt---atatactggaaatgacaaaaatacccttc 306  Q
    |||||||||||||||||  ||||||||||||||||||||| || |||| ||||||  ||| | |  ||   ||||||||||||| ||||||||| |||||    
T  1667823 cagtggcggaactggggggtggcaagggggagccaccgccacc-ccattctaaaaataaataaatttttttatatactggaaattacaaaaatatccttc 1667921  T
Q  307 agtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaa 368  Q
    | || || ||||||||||  |||||||||||| || |||| |||||||||||||||||||||    
T  1667922 aatagtactaatatttcctattcagtctcattccctcttcctgtttctctttcatctgagaa 1667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 436 - 565
Target Start/End: Original strand, 6786344 - 6786474
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc---gattactctccttcttcttcaatttagag 532  Q
    ||||||||||| ||| ||||||  || ||||||  ||||||||||| |||||||||||||||| ||||   |||||||||||| |||||||| ||| ||     
T  6786344 atccaccaccaaaccaccgccgtcgaaccgcga--ccactctcctccttctccatccatcaccgccgccgcgattactctcctccttcttcagttttgaa 6786441  T
Q  533 agctttcttcatctctctccacaaaccctaatt 565  Q
    |||| ||| ||||||||||||||||||||||||    
T  6786442 agctatctccatctctctccacaaaccctaatt 6786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 548 - 618
Target Start/End: Complemental strand, 780434 - 780362
Alignment:
Q  548 tctccacaaaccctaatt--attgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||||  | ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  780434 tctccacaaaccctaatttgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 780362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 1668174 - 1668229
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  1668174 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 1668229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 16658889 - 16658944
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16658889 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 16658944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 38521276 - 38521221
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  38521276 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 38521221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 22432341 - 22432291
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  22432341 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 22432291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 29182625 - 29182575
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29182625 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 29182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 22014740 - 22014800
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 498  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  22014740 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 22014800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 627
Target Start/End: Original strand, 22014904 - 22014963
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 627  Q
    ||||||||||||||||||||||| |  |||||||||||||| || |||||||||||||||    
T  22014904 tgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatttcca 22014963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 774904 - 774839
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  774904 atccaccaccacaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 780558 - 780493
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  780558 atccaccaccacaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 780493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 774730 - 774680
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| ||||||    
T  774730 tgtaatttccttcaattctgattctgatatgataattacatgttctttagt 774680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 18068471 - 18068536
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  18068471 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 18068536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 22432514 - 22432449
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  22432514 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 22432449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 27576659 - 27576724
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  27576659 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 27576724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 611
Target Start/End: Original strand, 6786507 - 6786550
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgtt 611  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6786507 tgtaacttccttcaattctgattttgatttgatgattacatgtt 6786550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 43916091 - 43916145
Alignment:
Q  518 ttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    ||||||| ||||||||||| ||| |||||||||||| ||||||| ||| ||||||    
T  43916091 ttcttcagtttagagagctatctccatctctctccataaaccctgattgttgtaa 43916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 586 - 618
Target Start/End: Original strand, 27576856 - 27576888
Alignment:
Q  586 tgattctgatttgatgattacatgttatttagt 618  Q
    |||||||||||||||||||||||||| ||||||    
T  27576856 tgattctgatttgatgattacatgttctttagt 27576888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 29182798 - 29182733
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  29182798 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 29182733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 276 - 572
Target Start/End: Complemental strand, 23218563 - 23218295
Alignment:
Q  276 ttatatactggaaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtg 375  Q
    ||||||||||||||| ||||||||| |||||| || || ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||||          
T  23218563 ttatatactggaaattacaaaaatatccttcaatagtactaatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaac------ 23218470  T
Q  376 agaagtgagaacagagaaagtgaaacggaatccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccact 475  Q
      |||||||||             |||  |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  |||||    
T  23218469 --aagtgagaa-------------acgcgatccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccact 23218395  T
Q  476 ctcctctttctccatccatcac---ctccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    |||||| |||||||||||||||   | |||||||||||||||| |||||||| ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  23218394 ctcctccttctccatccatcactgccgccgcgattactctcctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaa 23218295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 405 - 572
Target Start/End: Original strand, 45143856 - 45144016
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc---tcc 501  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||   |||||||||| ||||||||||||||||   |||    
T  45143856 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgcctcc 45143945  T
Q  502 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    |||||||||||||| || ||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  45143946 gcgattactctcctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 45144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 405 - 572
Target Start/End: Original strand, 45152625 - 45152785
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc---tcc 501  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||   |||||||||| ||||||||||||||||   |||    
T  45152625 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgcctcc 45152714  T
Q  502 gcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    |||||||||||||| || ||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  45152715 gcgattactctcctcctccttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 45152785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 469 - 572
Target Start/End: Complemental strand, 13740433 - 13740327
Alignment:
Q  469 gaccactctcctctttctccatccatcacctccgc---gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaatt 565  Q
    ||||||||||||| |||||||||||||||| ||||   |||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  13740433 gaccactctcctccttctccatccatcaccgccgccgcgattactctcctccttcttcagtttagagagctatctccatctctctccacaaaccctaatt 13740334  T
Q  566 attgtaa 572  Q
     ||||||    
T  13740333 gttgtaa 13740327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 13740302 - 13740243
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 627  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  13740302 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 13740243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 627
Target Start/End: Original strand, 21355936 - 21355995
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 627  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  21355936 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagttgatttcca 21355995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 45144041 - 45144112
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 639  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  45144041 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 45144112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 45152810 - 45152881
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 639  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  45152810 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 45152881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 572
Target Start/End: Original strand, 21355773 - 21355911
Alignment:
Q  444 ccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgcg------------attactctccttcttcttcaatttaga 531  Q
    ||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||| ||||             ||||||||||| |||||||| ||||||    
T  21355773 ccacaccaccgcgggtgagccgcga--ccactctcctccttctccatccatcaccgccgccgcgattactttcattactctcctccttcttcagtttaga 21355870  T
Q  532 gagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    ||||| ||| |||||||||||||||||||||||| ||||||    
T  21355871 gagctatctccatctctctccacaaaccctaattgttgtaa 21355911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 23218270 - 23218215
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23218270 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 23218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 54785238 - 54785186
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttg 620  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  54785238 tgtaatttccttcaattatgattctgatttgatgattacatgttcttaagttg 54785186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 21604495 - 21604545
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21604495 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 21604545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 46164416 - 46164366
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  46164416 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 46164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 47825977 - 47826027
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  47825977 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 47826027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 572
Target Start/End: Complemental strand, 33754141 - 33754038
Alignment:
Q  469 gaccactctcctctttctccatccatcacctccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattatt 568  Q
    |||||||| |||  ||||||||||||||||  ||  ||||||||| | |||||||| ||| ||||| | ||| ||||||| |||||||||||||||| ||    
T  33754141 gaccactcacctacttctccatccatcaccgacgtaattactctcatccttcttcagttttgagagttatctccatctctttccacaaaccctaattgtt 33754042  T
Q  569 gtaa 572  Q
    ||||    
T  33754041 gtaa 33754038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 618
Target Start/End: Complemental strand, 8433026 - 8432980
Alignment:
Q  572 atttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  8433026 atttccttcaattctgattctgatttgatgattacatgttctttagt 8432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 54785411 - 54785346
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| ||||||| ||||||| |  ||||||||||| |||||||||||||||| ||||    
T  54785411 atccaccaccacaccaccgccggcgagccgcaa--ccactctcctccttctccatccatcaccgccgc 54785346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 33754013 - 33753956
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacat--gttatttagttgatt 623  Q
    |||||||| |||||||||||||| |||||||||||||||||  ||| |||||||||||    
T  33754013 tgtaattttcttcaattatgattttgatttgatgattacatgagttctttagttgatt 33753956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 46164803 - 46164758
Alignment:
Q  205 tgtgatcagtggcggaactggg-gttggcaagggggagccaccgcc 249  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  46164803 tgtgatcagtggcggaactgggtggtggcaagggggagccaccgcc 46164758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 8433203 - 8433138
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  8433203 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 8433138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 21604322 - 21604387
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  21604322 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 21604387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 46164589 - 46164524
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  46164589 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 46164524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 47825805 - 47825870
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  47825805 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 47825870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 8433417 - 8433378
Alignment:
Q  210 tcagtggcggaactggggttggcaagggggagccaccgcc 249  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  8433417 tcagtggcggaaccgggggtggcaagggggagccaccgcc 8433378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 45143774 - 45143841
Alignment:
Q  302 ccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 369  Q
    |||||| || || ||||||||||  ||||||||||| ||| ||||  |||||||||||||||||||||    
T  45143774 ccttcaatagtactaatatttcctattcagtctcatgtcctcttcccgtttctctttcatctgagaac 45143841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 45152543 - 45152610
Alignment:
Q  302 ccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaac 369  Q
    |||||| || || ||||||||||  ||||||||||| ||| ||||  |||||||||||||||||||||    
T  45152543 ccttcaatagtactaatatttcctattcagtctcatgtcctcttcccgtttctctttcatctgagaac 45152610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 44504337 - 44504386
Alignment:
Q  215 ggcggaact-ggggttggcaagggggagccaccgccgccaccatcctaaaa 264  Q
    ||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  44504337 ggcggaactaggggttggcaagggggagccaccgccacc-ccatcctaaaa 44504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 211 - 572
Target Start/End: Original strand, 52893141 - 52893475
Alignment:
Q  211 cagtggcggaactgggg-ttggcaagggggagccaccgccgccaccatcctaaaacaaaaaagaagtt----atatactggaaatgacaaaaataccctt 305  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||| |  ||    ||||||| ||||| ||||||||| ||||    
T  52893141 cagtggcggaactgggggttggcaagggggagccaccgccacc-ccatcctaaaaaaaaaaaaacattttttatatactagaaattacaaaaatatcctt 52893239  T
Q  306 cagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaagtgagaacagagaaagtgaaacggaa 405  Q
    || || || ||||||||||  ||||||||||||||| |||| |||||||||||||||||           |||||||||||             |||  |    
T  52893240 caatagtactaatatttcctattcagtctcatttcctcttcctgtttctctttcatctg-----------agaagtgagaa-------------acgcta 52893315  T
Q  406 tccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc-- 503  Q
    ||||||||||||||||| || ||||||| |||||||||||        |||||||||||||||   |||||||||| |||||||||||||||| ||||      
T  52893316 tccttttcttctcccaaccaaagcaaattgatccaccacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgccgccg 52893405  T
Q  504 -gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
     |||||||||||| |||||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  52893406 cgattactctcctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 52893475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 572
Target Start/End: Complemental strand, 2339225 - 2338889
Alignment:
Q  211 cagtggcggaactggggt-tggcaagggggagccaccgccgccaccatcctaaaacaaaaaagaagtt---atatactggaaatgacaaaaatacccttc 306  Q
    |||||||||||||||||  ||||||||||||||||||||| || |||| ||||||  ||| | |  ||   ||||| ||||||| ||||||||| |||||    
T  2339225 cagtggcggaactggggggtggcaagggggagccaccgccacc-ccattctaaaaataaataaatttttttatatattggaaattacaaaaatatccttc 2339127  T
Q  307 agtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtgagaagtgagaacagagaaagtgaaacggaat 406  Q
    | || || ||||||||||  ||||||||||||||| ||||  |||||||||||||||||||||        |||||||||             |||  ||    
T  2339126 aatagtactaatatttcctattcagtctcatttcctcttcccgtttctctttcatctgagaac--------aagtgagaa-------------acgcgat 2339048  T
Q  407 ccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac---ctccgc 503  Q
    |||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||   | ||||    
T  2339047 ccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcactgccgccgc 2338958  T
Q  504 gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    |||||||||||| |||||||| ||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  2338957 gattactctcctccttcttcagtttagagagttatctccatctctctccacaaaccctaattgttgtaa 2338889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 52893500 - 52893571
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 639  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  52893500 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 52893571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 21239504 - 21239575
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttccaaccctaattgtt 639  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||  |||| |||||||||    
T  21239504 tgtaatttccttcaattctgattatgatttgatgattacatgttctttagttgattgtcaactctaattgtt 21239575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 21239407 - 21239479
Alignment:
Q  500 ccgcgattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
    ||||||| ||||||||||||||||| |||||| |||| ||| | |||||||||||||||||||||| ||||||    
T  21239407 ccgcgatcactctccttcttcttcagtttagaaagctatctccgtctctctccacaaaccctaattgttgtaa 21239479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 9456483 - 9456533
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9456483 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 9456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 21239357 - 21239397
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccacc 445  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  21239357 atccttttcttctcccaaccaaagcaaatcgatccaccacc 21239397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 2338864 - 2338811
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| |||||||   |||||||||| |||| ||||||    
T  2338864 tgtaatttccttcaattatgattatgatttg--tattacatgttctttatttgatt 2338811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 9456310 - 9456375
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||| ||||  ||||||| ||| |||||||||||||||| ||||    
T  9456310 atccaccaccacaccactgccggcgagctgcga--ccactcttctccttctccatccatcaccgccgc 9456375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 9e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 405 - 572
Target Start/End: Complemental strand, 3935607 - 3935447
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc- 503  Q
    |||||||||||||||||| || |||||||||||||||||||        |||||||||||||||  ||||||||||| |||||||||||||||| ||||     
T  3935607 atccttttcttctcccaaccaaagcaaatcgatccaccacc--------gccggtgagccgcga--ccactctcctccttctccatccatcaccgccgcc 3935518  T
Q  504 --gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
      |||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  3935517 gcgattactctcctacttcttcagtttagagagctatctccatctctctccacaaaccctaattgttgtaa 3935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 405 - 572
Target Start/End: Complemental strand, 38978608 - 38978448
Alignment:
Q  405 atccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgcg 504  Q
    |||||||||||||||||| || ||||||||||||||| |||        |||||||||||||||   |||||||||| |||||||||||||||| ||||     
T  38978608 atccttttcttctcccaaccaaagcaaatcgatccactacc--------gccggtgagccgcgat--cactctcctccttctccatccatcaccgccgcc 38978519  T
Q  505 ---attactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
       ||||||||||| |||||||| |||||| |||| ||| |||||||||||||||||||||||| ||||||    
T  38978518 gcaattactctcctccttcttcagtttagaaagctatctccatctctctccacaaaccctaattgttgtaa 38978448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 19319409 - 19319306
Alignment:
Q  210 tcagtggcggaactggggttggcaagggggagccaccgccgccaccatcctaaaacaaa-aaagaagttatatactggaaatgacaaaaatacccttcag 308  Q
    ||||||||||||||| |||||||||||| ||||||||||| || ||||| ||||| ||| ||| || ||||||| ||||||| |||||||||||||| ||    
T  19319409 tcagtggcggaactgaggttggcaagggagagccaccgccacc-ccatcttaaaaaaaataaaaaatttatatattggaaattacaaaaataccctttag 19319311  T
Q  309 taata 313  Q
    |||||    
T  19319310 taata 19319306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 3935422 - 3935367
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatt 623  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  3935422 tgtaatttccttcaattatgattataatttgatgattacatgttctttagttgatt 3935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 38978716 - 38978614
Alignment:
Q  276 ttatatactggaaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgagaaccaagtg 375  Q
    ||||||||| ||||| ||||||||| |||||  || || ||||||||||  |||||| |||||||| ||||  |||||||||||||||||||| ||||||    
T  38978716 ttatatactagaaattacaaaaatatccttctatagtactaatatttcctattcagtttcatttcctcttcccgtttctctttcatctgagaa-caagtg 38978618  T
Q  376 agaa 379  Q
    ||||    
T  38978617 agaa 38978614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 25697617 - 25697567
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25697617 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 25697567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 627
Target Start/End: Original strand, 32339611 - 32339672
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacat--gttatttagttgatttcca 627  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  32339611 tgtaattttcttcaattatgattctgatttgatgattacatgagttctttagttgatttcca 32339672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 609
Target Start/End: Complemental strand, 38978423 - 38978382
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatg 609  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38978423 tgtaatttccttcaattatgattatgatttgatgattacatg 38978382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 3935704 - 3935624
Alignment:
Q  287 aaatgacaaaaatacccttcagtaataataatatttccatttcagtctcatttccccttcatgtttctctttcatctgaga 367  Q
    |||| ||||||||| |||||| || || |||||||| |  ||||||||||||||| ||||  |||||||||||||||||||    
T  3935704 aaattacaaaaatatccttcaatagtactaatattttctattcagtctcatttcctcttcccgtttctctttcatctgaga 3935624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 25697790 - 25697725
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  25697790 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 25697725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 406 - 572
Target Start/End: Complemental strand, 11400 - 11244
Alignment:
Q  406 tccttttcttctcccaagcatagcaaatcgatccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc-- 503  Q
    ||||||||||||||||| || |||||||||||||||||||        | |||||||||||||  ||||| ||||| |||||||||||||||| ||||      
T  11400 tccttttcttctcccaaccaaagcaaatcgatccaccacc--------gacggtgagccgcga--ccactttcctccttctccatccatcaccgccgccg 11311  T
Q  504 -gattactctccttcttcttcaatttagagagctttcttcatctctctccacaaaccctaattattgtaa 572  Q
     |||||||||||| ||||   | ||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  11310 cgattactctcctccttc---agtttagagagctatctccatctctctccacaaatcctaattgttgtaa 11244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 11219 - 11160
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttcca 627  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11219 tgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatttcca 11160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 26014536 - 26014586
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26014536 tgtaatttccttcaattctgattctgatttgatgattacatgttatttagt 26014586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 26354696 - 26354848
Alignment:
Q  211 cagtggcggaactggggttggcaagggggagccaccgccgccaccatcctaaaacaaaaaagaagttatatactggaaatgacaaaaatacccttcagta 310  Q
    ||||||||||||||| | ||||||||||||||||||||| || ||||| ||||| ||||||  | ||||| ||||||||| || | ||| ||||| | ||    
T  26354696 cagtggcggaactggaggtggcaagggggagccaccgccacc-ccatcttaaaa-aaaaaaatatttatacactggaaattactacaatgccctttatta 26354793  T
Q  311 ataataatatttccatttcagtctcatttccccttcatgtttctctttcatctga 365  Q
    |||  |||||| ||| |||| | |||||||| ||||   ||||||||||||||||    
T  26354794 atatgaatattaccaattcaatttcatttcctcttcccctttctctttcatctga 26354848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 29599301 - 29599251
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29599301 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 29599251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 6165253 - 6165193
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 498  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  6165253 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 6165193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 16764741 - 16764681
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 498  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  16764741 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 16764681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 324748 - 324798
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  324748 tgtaatttccttcaattctgattctgatttgatgattagatgttctttagt 324798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 26355075 - 26355125
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  26355075 tgtaacttccttcaattctgattctgatttgatgattacatgttctttagt 26355125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 10801773 - 10801713
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 498  Q
    ||||||||||||||| ||||  |||||||||||  ||||||||||| ||||||||||||||||    
T  10801773 atccaccaccacaccaccgcttgtgagccgcga--ccactctcctccttctccatccatcacc 10801713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 10801608 - 10801547
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatttcca 627  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||||||    
T  10801608 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatttcca 10801547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 324575 - 324640
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  324575 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 324640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 26354901 - 26354966
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    |||||||||| |||| ||||||| || ||||||  ||||||||||| |||||||||||||||| ||||    
T  26354901 atccaccaccgcaccaccgccggcgaaccgcga--ccactctcctccttctccatccatcaccgccgc 26354966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 29599474 - 29599409
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  29599474 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 29599409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 16764577 - 16764520
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 623  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  16764577 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 16764520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 365
Target Start/End: Original strand, 26014229 - 26014370
Alignment:
Q  224 ggggttggcaagggggagccaccgccgccaccatc-ctaaaacaaaaaagaagttatatactggaaatgacaaaaatacccttcagtaataataatattt 322  Q
    |||| ||||||||||||||||||||| || ||||| ||| || |||| | || ||||| ||||||||| || | ||| ||||| | |||||  ||||||     
T  26014229 gggggtggcaagggggagccaccgccacc-ccatctctataaaaaaataaaatttatacactggaaattactataatgcccttaactaatatgaatatta 26014327  T
Q  323 ccatttcagtctcatttccccttcatgtttctctttcatctga 365  Q
    ||| |||| | |||||||| ||||   ||||||||||||||||    
T  26014328 ccaattcaatttcatttcctcttcccctttctctttcatctga 26014370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 48183914 - 48183955
Alignment:
Q  212 agtggcggaactggggttggcaagggggagccaccgccgccac 254  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  48183914 agtggcggaactggggt-ggcaagggggagccaccgccaccac 48183955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 324368 - 324404
Alignment:
Q  213 gtggcggaactggggttggcaagggggagccaccgcc 249  Q
    |||||||| |||||| |||||||||||||||||||||    
T  324368 gtggcggatctgggggtggcaagggggagccaccgcc 324404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 608
Target Start/End: Complemental strand, 6165089 - 6165049
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacat 608  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  6165089 tgtaattgtcttcaattctgattctgatttgatgattacat 6165049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 26014422 - 26014487
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | || || |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  26014422 atccaccaccacaccactgctggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 26014487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 6472294 - 6472244
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6472294 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 6472244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 9371876 - 9371926
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9371876 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 9371926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 21358072 - 21358022
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21358072 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 21358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 6472467 - 6472402
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  6472467 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 6472402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 9371703 - 9371768
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||    
T  9371703 atccaccaccacaccactgccggcgagccgcga--ccactcttctccttctccatccatcaccgccgc 9371768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 21358420 - 21358267
Alignment:
Q  210 tcagtggcggaactggggttggcaagggggagccaccgccgccaccatc-ctaaaacaaaaaagaagttatatactggaaatgacaaaaatacccttcag 308  Q
    |||||||||||||||||| ||| ||||||||||||||||| || ||||| ||| || |||||| || ||||| ||||||||| || | ||| ||||| |     
T  21358420 tcagtggcggaactgggg-tggtaagggggagccaccgccacc-ccatctctataa-aaaaaaaaatttatacactggaaattactataatgcccttaac 21358324  T
Q  309 taataataatatttccatttcagtctcatttccccttcatgtttctctttcatctga 365  Q
    |||||  |||||| ||| |||| | ||||||||  |||   ||||||||||||||||    
T  21358323 taatatgaatattaccaattcaatttcatttccttttcccctttctctttcatctga 21358267  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 611
Target Start/End: Complemental strand, 35013024 - 35012981
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgtt 611  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||    
T  35013024 tgtaatttccttcaatcctgattctgatttgataattacatgtt 35012981  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 25533963 - 25534000
Alignment:
Q  211 cagtggcggaactggggttggcaagggggagccaccgcc 249  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25533963 cagtggcggaactggggt-ggcaagggggagccaccgcc 25534000  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 6472735 - 6472690
Alignment:
Q  211 cagtggcggaactggggt-tggcaagggggagccaccgccgccacc 255  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  6472735 cagtggcggaactggggggtggcaagggggagccaccgcagccacc 6472690  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 44660378 - 44660435
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagttgatttc 625  Q
    ||||||||| ||||||| ||||| |  ||| ||||||||||||| |||||||||||||    
T  44660378 tgtaatttcgttcaattctgatttttctttaatgattacatgttctttagttgatttc 44660435  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 21453228 - 21453188
Alignment:
Q  210 tcagtggcggaactggggt-tggcaagggggagccaccgcc 249  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  21453228 tcagtggcggaactggggggtggcaagggggagccaccgcc 21453188  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 35013198 - 35013133
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| | ||||| | |||||||  ||||||| ||| |||||||||||||||| ||||    
T  35013198 atccaccaccacaccactgccggcgggccgcga--ccactcttctccttctccatccatcaccgccgc 35013133  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 32397302 - 32397352
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattacatgttatttagt 618  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  32397302 tgtaatttccttcaattctgattctgatttgatgattacatgttctttagt 32397352  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 14125144 - 14125106
Alignment:
Q  210 tcagtggcggaactggggttggcaagggggagccaccgc 248  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  14125144 tcagtggcggaactgggggtggcaagggggagccaccgc 14125106  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 16497606 - 16497452
Alignment:
Q  211 cagtggcggaactg-gggttggcaagggggagccaccgccgccaccatc-ctaaaacaaaaaagaagttatatactggaaatgacaaaaatacccttcag 308  Q
    |||||||||||||| ||| ||||||||||||||||||||| || ||||| ||| || |||||| || ||||| |||| |||| || | ||| ||||| |     
T  16497606 cagtggcggaactgcggggtggcaagggggagccaccgccacc-ccatctctataa-aaaaaaaaaattatacactgaaaattactataatgcccttaac 16497509  T
Q  309 taataataatatttccatttcagtctcatttccccttcatgtttctctttcatctga 365  Q
    |||||  |||||| ||| |||| | |||||||| ||||   ||||||||||||||||    
T  16497508 taatatgaatattaccaattcaatttcatttcctcttcccctttctctttcatctga 16497452  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 32397128 - 32397193
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacctccgc 503  Q
    ||||||||||||||| ||||||| || || |||  ||||||||||| | |||||||||||||| ||||    
T  32397128 atccaccaccacaccaccgccggcgatccccga--ccactctcctcctgctccatccatcaccgccgc 32397193  T

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Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 2768 - 2828
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcacc 498  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  2768 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcacc 2828  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 2932 - 2989
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 623  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  2932 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 2989  T

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Target: scaffold0285 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 497
Target Start/End: Complemental strand, 8587 - 8528
Alignment:
Q  436 atccaccaccacaccgccgccggtgagccgcgagaccactctcctctttctccatccatcac 497  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||    
T  8587 atccaccaccacaccaccgctggtgagccgcga--ccactctcctccttctccatccatcac 8528  T

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Target: scaffold0285; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 623
Target Start/End: Complemental strand, 8423 - 8366
Alignment:
Q  568 tgtaatttccttcaattatgattctgatttgatgattac--atgttatttagttgatt 623  Q
    |||||||  |||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  8423 tgtaattgtcttcaattctgattctgatttgatgattacatatgttttttagttgatt 8366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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