View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6254_low_10 (Length: 326)

Name: NF6254_low_10
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6254_low_10
NF6254_low_10
[»] chr1 (8 HSPs)
chr1 (18-326)||(35900279-35900587)
chr1 (64-325)||(17810286-17810547)
chr1 (99-324)||(44613922-44614147)
chr1 (58-326)||(11543066-11543334)
chr1 (180-326)||(44146311-44146457)
chr1 (237-324)||(44794247-44794334)
chr1 (99-154)||(44794361-44794416)
chr1 (99-144)||(44146253-44146298)
[»] scaffold0061 (1 HSPs)
scaffold0061 (41-326)||(27771-28056)
[»] scaffold0017 (2 HSPs)
scaffold0017 (41-326)||(170736-171021)
scaffold0017 (60-326)||(181842-182108)
[»] chr2 (2 HSPs)
chr2 (63-324)||(29227497-29227758)
chr2 (63-324)||(29340796-29341057)
[»] chr3 (1 HSPs)
chr3 (46-326)||(26729486-26729766)
[»] chr5 (1 HSPs)
chr5 (58-326)||(29506148-29506416)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 35900279 - 35900587
Alignment:
18 acaactggtcttttaatttaccctatggtttcgacctaaccttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||| |||| |||||| | |||||||||||||    
35900279 acaactggtcttttaatttaccctatggtttcgacctattcttgatgtggaaaggggtagaccaactttacataaatccttataggtttttaaaaacaat 35900378  T
118 tgatctctcaagcaaccatcttacaggcgtaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggg 217  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35900379 tgatctttcaagcaaccatcttacaggggaaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggg 35900478  T
218 gaaatcattccgaacataggaaacttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35900479 gaaatcattccgaacataggaaacttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattg 35900578  T
318 atcgtctca 326  Q
    |||||||||    
35900579 atcgtctca 35900587  T

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Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 64 - 325
Target Start/End: Complemental strand, 17810547 - 17810286
Alignment:
64 gtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagttgaaatg 163  Q
    ||||||||| ||||||| ||  |||||| || || ||  | |||||||||  |||||||| |||||||||||||||||||| |  ||||||| ||||||     
17810547 gtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacaggggacataccagctgaaatt 17810448  T
164 gagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttcttg 263  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||| ||||| ||||||||||    
17810447 gagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttcaaatcactcgaatttcttg 17810348  T
264 atctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctc 325  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
17810347 atctgtcaagaaatcatctgtcaggcagaattccttccagtctagctcacattgatcgtctc 17810286  T

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Target: chr1; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 99 - 324
Target Start/End: Original strand, 44613922 - 44614147
Alignment:
99 ataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtc 198  Q
    ||||| |||||||||| |||||||||||||||||||||||||| || | |||||||   ||| |  | |||||| |||| ||||||||||||||||||||    
44613922 ataagtttttaaaaaccattgatctctcaagcaaccatcttactggggaaataccatcggaagttcaatacttaattggattgatttccttaaatttgtc 44614021  T
199 gaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattcct 298  Q
     ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||    
44614022 aaggaacaatctcagtggggaaatcatttcaaacataggaaacttcaagttacttgaatttcttgatctgtcaagaaattgtctttcaggtagaattcct 44614121  T
299 tccagtctagcccacattgatcgtct 324  Q
    |||||| |||| | ||||||||||||    
44614122 tccagtatagctcgcattgatcgtct 44614147  T

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Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 326
Target Start/End: Complemental strand, 11543334 - 11543066
Alignment:
58 cttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagtt 157  Q
    |||||| |||||||| ||||| | ||  |||| |||| |  ||| |||||||||||  |||||| | |||||||||||||||||||| | ||||||| |     
11543334 cttgatatggaaaggtgtagatcaaccctacagaaatgcagataggcttttaaaaagcattgatatgtcaagcaaccatcttacaggggaaataccaatg 11543235  T
158 gaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaat 257  Q
    ||||| ||||| ||| |||| |||||||| ||||||||||| || ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||    
11543234 gaaattgagtatttaattggattgatttcattaaatttgtcaagaaacaatctcagtgggaaaataattgcaaacataggaaacttcaagtcacttgaat 11543135  T
258 ttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    |||||||||| |||||||| | ||||||||| |||||||||||||||||||| || |||||||||||||    
11543134 ttcttgatctgtcaagaaaccgtctttcaggcagaattccttccagtctagctcatattgatcgtctca 11543066  T

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Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 44146311 - 44146457
Alignment:
180 tgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttcttgatctctcaagaaatca 279  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| || ||| | |||||||||||||| ||||||||||     
44146311 tgatttccttaaatttgtcaaggaacaatctcagtggggaaatcatttcaaacataggaaactttaactcattagaatttcttgatctttcaagaaatcg 44146410  T
280 tctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    ||||||||| | |||||||||||| ||||| || |||||||||||||    
44146411 tctttcaggcaaaattccttccagcctagctcatattgatcgtctca 44146457  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 44794334 - 44794247
Alignment:
237 gaaacttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtct 324  Q
    ||||||| || ||| | |||||||||||||| |||||||||||| | ||||| | |||||||||||||||||| || |||||||||||    
44794334 gaaactttaactcattagaatttcttgatctttcaagaaatcatttgtcaggcaaaattccttccagtctagctcatattgatcgtct 44794247  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 44794416 - 44794361
Alignment:
99 ataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaatacca 154  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||    
44794416 ataagtttttaaaaaccattgatctctcaagcaaccatcttacaggcgaaatacca 44794361  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 44146253 - 44146298
Alignment:
99 ataagcttttaaaaacaattgatctctcaagcaaccatcttacagg 144  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
44146253 ataagcttttaaaaaccattgatctctcaagcaaccatcttacagg 44146298  T

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Target: scaffold0061 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 41 - 326
Target Start/End: Complemental strand, 28056 - 27771
Alignment:
41 tatggtttcgacctaaccttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatctta 140  Q
    |||||||| ||| || ||||||| |||||||| ||||||| |   ||||||||| |  ||||| |||||||||| |||||||||||||||||||||||||    
28056 tatggttttgacatatccttgatttggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatctta 27957  T
141 caggcgtaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaa 240  Q
    |||| | |||||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||   |||||||||||    
27956 caggggaaataccaactgaaatggagtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaa 27857  T
241 cttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    |||||| |||||||||||||| ||||| |||||||||||| | |||||   |||||||||||||||||| | ||||||||||||||    
27856 cttcaaatcacttgaatttctagatctgtcaagaaatcatttgtcaggcgaaattccttccagtctagctcgcattgatcgtctca 27771  T

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Target: scaffold0017 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 41 - 326
Target Start/End: Original strand, 170736 - 171021
Alignment:
41 tatggtttcgacctaaccttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatctta 140  Q
    |||||||| ||| || ||||||| |||||||| ||||||| |   ||||||||| |  ||||| |||||||||| |||||||||||||||||||||||||    
170736 tatggttttgacatatccttgatttggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatctta 170835  T
141 caggcgtaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaa 240  Q
    |||| | |||||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||   |||||||||||    
170836 caggggaaataccaactgaaatggagtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaa 170935  T
241 cttcaagtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    |||||| |||||||||||||| ||||| |||||||||||| | |||||   |||||||||||||||||| | ||||||||||||||    
170936 cttcaaatcacttgaatttctagatctgtcaagaaatcatttgtcaggcgaaattccttccagtctagctcgcattgatcgtctca 171021  T

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Target: scaffold0017; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 60 - 326
Target Start/End: Original strand, 181842 - 182108
Alignment:
60 tgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagttga 159  Q
    ||||||||||||| | |||| |||  ||||||||| |  ||||| |||||||||| |||||||||||||||||| |||||||||| | |||||||  |||    
181842 tgatgtggaaaggtgcagacagacggtacaaaaatgcagataagtttttaaaaacgattgatctctcaagcaacaatcttacaggggaaataccaactga 181941  T
160 aatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaattt 259  Q
    |||| | |||||| |||  |||||||| ||||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||    
181942 aatgcaatacttagttgcattgatttcattaaatttgtcaaggaacaatctccgtggggaaatcatttcaaacataggaaacttcaagtcactcgaattt 182041  T
260 cttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||    
182042 cttgatctgtcaagaaataatctgtcaggaagaattccttccagtctagctcacattgaccgtctca 182108  T

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Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 29227758 - 29227497
Alignment:
63 tgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagttgaaat 162  Q
    |||||||||| ||| ||| ||  ||||||||| || ||| | |||||||||| |||||||||||||||||||||||||| || | |||||||  ||||||    
29227758 tgtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaat 29227659  T
163 ggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttctt 262  Q
    | ||  ||||||||| |||||| ||||||||||||| |||||||||||||| | |||||||||| | ||||||||||||||||| ||||| |||||||||    
29227658 gaagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttcaaatcactcgaatttctt 29227559  T
263 gatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtct 324  Q
    ||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
29227558 gatctgtcaagaaatcgtctttcaggtagaattccttccagtctagctcacattgatcgtct 29227497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 29341057 - 29340796
Alignment:
63 tgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagttgaaat 162  Q
    |||||||||| ||| ||| ||  ||||||||| || ||| | |||||||||| |||||||||||||||||||||||||| || | |||||||  ||||||    
29341057 tgtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaat 29340958  T
163 ggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaatttctt 262  Q
    | ||  ||||||||| |||||| ||||||||||||| |||||||||||||| | |||||||||| | ||||||||||||||||| ||||| |||||||||    
29340957 gaagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttcaaatcactcgaatttctt 29340858  T
263 gatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtct 324  Q
    ||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
29340857 gatctgtcaagaaatcgtctttcaggtagaattccttccagtctagctcacattgatcgtct 29340796  T

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Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 26729486 - 26729766
Alignment:
46 tttcgacctaaccttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggc 145  Q
    |||| |||||| ||||||||||||||| | ||||| ||  ||||||||| |  ||| | |||||||||  |||||||||||||||||| |||||  |||     
26729486 tttcaacctaatcttgatgtggaaaggtgaagaccaaccctacaaaaatgcagatatgtttttaaaaagcattgatctctcaagcaactatcttttaggg 26729585  T
146 gtaataccagttgaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttca 245  Q
    | |||||||  |||||||||||| ||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| ||| | ||||||||||||||||    
26729586 gaaataccaactgaaatggagtatttagttggattgatttccttaaatttgtcaaggaacaatcttagtggggaaataatttcaaacataggaaacttca 26729685  T
246 agtcacttgaatttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    | |||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||| || |||||||| ||||    
26729686 aatcacttgaatttcttgatctatcaagtaatcatttgtcaggaagaattccttccagtctagctcatattgatcgcctca 26729766  T

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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 326
Target Start/End: Complemental strand, 29506416 - 29506148
Alignment:
58 cttgatgtggaaaggggtagaccgactatacaaaaattcttataagcttttaaaaacaattgatctctcaagcaaccatcttacaggcgtaataccagtt 157  Q
    ||||||||||||||| || |||||||| |  |||||| |  ||||| ||||||| |  |||||||||||||||||||| |||| ||| | |||||||       
29506416 cttgatgtggaaaggtgtggaccgactctttaaaaatgcagataagtttttaaacagcattgatctctcaagcaaccaccttataggagaaataccaaca 29506317  T
158 gaaatggagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttcaagtcacttgaat 257  Q
    ||||| ||||||||| |||| ||||  |||||||||||||| ||||||||||| ||||||||||| ||| |  |||||||||| ||||||||||||||||    
29506316 gaaattgagtacttacttggattgacatccttaaatttgtcaaggaacaatcttagtggggaaataatttcagacataggaaaattcaagtcacttgaat 29506217  T
258 ttcttgatctctcaagaaatcatctttcaggaagaattccttccagtctagcccacattgatcgtctca 326  Q
    |||||||||| |||||||||||||| ||||| | |||||||||||||||||| || |||||||| ||||    
29506216 ttcttgatctatcaagaaatcatctatcaggcacaattccttccagtctagctcatattgatcgcctca 29506148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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