View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_14 (Length: 272)
Name: NF6254_low_14
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 15796886 - 15796680
Alignment:
| Q |
1 |
aatttgaatatttgaacaagagaataaattaaaaggcgagaaaattgtaagagaccaaattgagtctttactctttcatagcttataaaacaaaaaacaa |
100 |
Q |
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| T |
15796886 |
aatttgaatatttgaacaagagaataaattaaa-ggcgagaaaattgtaagagaccaaactgagtctttactctttcatagcttataaaacaatatacaa |
15796788 |
T |
|
| Q |
101 |
tttcaatcgtaggcatcacttacaacgattctacttaatttattacattaataaattgtttacaaataactcacacctcatgtcacatggtcagagagac |
200 |
Q |
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| T |
15796787 |
tttcaatcgtaggcatcacttacaacgattctacttaatttattacattaataaattgtttacaaataactcacatctcatgtcacatggtcagagagac |
15796688 |
T |
|
| Q |
201 |
taaacatg |
208 |
Q |
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||| |||| |
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| T |
15796687 |
taagcatg |
15796680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 15796546 - 15796485
Alignment:
| Q |
201 |
taaacatgataccagacttaatgactacatagtctttactctaacattaaacgagccctttg |
262 |
Q |
| |
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| T |
15796546 |
taaacatgataccagacttaatgactacatagtctttactctaacattaaacgagccctttg |
15796485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 32046557 - 32046525
Alignment:
| Q |
36 |
gcgagaaaattgtaagagaccaaattgagtctt |
68 |
Q |
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| T |
32046557 |
gcgagaaaattgtaagagaccaaattgggtctt |
32046525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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