View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_15 (Length: 272)
Name: NF6254_low_15
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 45309463 - 45309214
Alignment:
| Q |
19 |
agtatcatgaaaggagtcttatggtcaactaagtacatcaaggtaacataacaa-----tgctgaattagtttaacagtattgagttgaacgactctgga |
113 |
Q |
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| T |
45309463 |
agtatcatgaaaggagtcttatggtcaactaagtacatcaaggtaacataacaaaacaatgctgaattagtttaacagtattgagttgaacgactctgga |
45309364 |
T |
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| Q |
114 |
ttgaggtgttttatactttctacacctacttgtaggaaaaatctgtgttattataatattttagttaggtattctagacaaatctgatcagtttggtcta |
213 |
Q |
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| T |
45309363 |
ttgaggtgctttatactttctacacctacttgtaggaaaaatctgtgttattataatattttagttagatattctagacaaatctgatcagtttggtcta |
45309264 |
T |
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| Q |
214 |
tgaaaataggcaaacaacaacaattctgaagatgttggatcaagtataat |
263 |
Q |
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| T |
45309263 |
tgaaaataggcaaacaacaacaattctgaagatgttggatcaagtataat |
45309214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 88123 - 88043
Alignment:
| Q |
19 |
agtatcatgaaaggagtcttatggtcaactaagtacatcaaggtaacataacaatgctgaattagtttaacagtattgagt |
99 |
Q |
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| T |
88123 |
agtatcctgaaaggaatcttaaggtcaactaagtacatcagggtaacataacaatgctgaatttgtttaacagtattgagt |
88043 |
T |
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