View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_18 (Length: 250)
Name: NF6254_low_18
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_18 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 15797092 - 15796924
Alignment:
| Q |
83 |
atctgaagcagaggtaaactattcttctactatgacaaatgagtgaggactcaatttagtccatgacaattttctcgcggtccaatttagtctctgacaa |
182 |
Q |
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| T |
15797092 |
atctgaagcagagctaaactattcttctactatgacaaatgagtgaggactcaatttagtccatgacaattttctcgcggtccaatttagtccctgataa |
15796993 |
T |
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| Q |
183 |
aaaataatatcaaactagtcttaaacattttcaaattgagga-aaattagtgcct-ttttatagtgagtc |
250 |
Q |
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| T |
15796992 |
aaaataataccaaac-aattttgaacattttcaaattgaggacaaattggggcctcttttatagtgagtc |
15796924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15797196 - 15797132
Alignment:
| Q |
18 |
caaactacaaaaagaatatttcactatggacaaaattctatcattgttggtttatcatgacatgc |
82 |
Q |
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| T |
15797196 |
caaactacaaaaagaatatttcaccatggacaaaattccatcattgttggtttattatgacatgc |
15797132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 44173984 - 44173910
Alignment:
| Q |
147 |
gacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaattgag |
222 |
Q |
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| T |
44173984 |
gacaattttctcgcaacccaatttagtatca-acaaaaaataatatcaaactagtctctaacatttttaaattgag |
44173910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 1278943 - 1279028
Alignment:
| Q |
134 |
caatttagtccatgacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaatt |
219 |
Q |
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| T |
1278943 |
caatttggtctatgccaattttgttgcggcccaatttaatctcagacaaaaaataataccaaattagtccctgacattttcaaatt |
1279028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 39003958 - 39003906
Alignment:
| Q |
122 |
tgagtgaggactcaatttagtccatgacaattttctcgcggtccaatttagtc |
174 |
Q |
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| T |
39003958 |
tgagtgaagactcaatttggtccttcacaattttctcacggtctaatttagtc |
39003906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 39932599 - 39932547
Alignment:
| Q |
163 |
tccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttca |
215 |
Q |
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| T |
39932599 |
tccaatttaatatttgacaaaaaataatatcaaactaggctctaacattttca |
39932547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 31317787 - 31317855
Alignment:
| Q |
134 |
caatttagtccatgacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtc |
202 |
Q |
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| T |
31317787 |
caatttggtccttgacagttttctcacggcctaatttagtccccgacaaaaaataataccaaactagtc |
31317855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 37458857 - 37458788
Alignment:
| Q |
148 |
acaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaa |
217 |
Q |
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| T |
37458857 |
acaattttcttgcagctcaatttagtatctgacaaaaagtaatatcaaactattcctttacattttcaaa |
37458788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 11618313 - 11618384
Alignment:
| Q |
130 |
gactcaatttagtccatgacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtc |
202 |
Q |
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| T |
11618313 |
gactcaatttggtccctgacaagttt-tcgcggcccgatttagctaccgacaaaaaataatatcaaactagtc |
11618384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 22244954 - 22245014
Alignment:
| Q |
117 |
acaaatgagtgaggactcaatttagtccatgacaattttctcgcggtccaatttagtctct |
177 |
Q |
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| T |
22244954 |
acaaatgagtagagacccaatttggtccctgacaattttctcgcggcccaatttagtctct |
22245014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 43396862 - 43396924
Alignment:
| Q |
159 |
gcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaattga |
221 |
Q |
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|||| ||||||||||||| || || |||||||| |||||||||| | ||||||||||||||| |
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| T |
43396862 |
gcggaccaatttagtctccgagaagaaataataccaaactagtcattgacattttcaaattga |
43396924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 33756729 - 33756782
Alignment:
| Q |
148 |
acaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagt |
201 |
Q |
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| T |
33756729 |
acaattttctcgcgatccaatttaatctccaacaaaaaataaaaccaaactagt |
33756782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 22148 - 22063
Alignment:
| Q |
134 |
caatttagtccatgacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaatt |
219 |
Q |
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|||||| ||| ||| ||||||| | |||| |||||||| |||| |||||||||||||| |||| ||||| ||||||||||||| |
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| T |
22148 |
caatttggtctatgccaattttgttgcggcccaatttaatctcagacaaaaaataataccaaattagtccctgacattttcaaatt |
22063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 16810210 - 16810118
Alignment:
| Q |
146 |
tgacaattttctcgcggtccaatttagtctctgacaaaaaataatatcaaactagtcttaaacattttcaaattgagga-aaattagtgcctt |
237 |
Q |
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| T |
16810210 |
tgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctccgacattgtcaaattggggacaaattagtccctt |
16810118 |
T |
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