View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_19 (Length: 246)
Name: NF6254_low_19
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 53615386 - 53615614
Alignment:
| Q |
18 |
gttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttc |
117 |
Q |
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| T |
53615386 |
gttatggcagtagtcgacggcgtcaataagttgttggaatagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttc |
53615485 |
T |
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| Q |
118 |
agaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctcctgatac |
217 |
Q |
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| T |
53615486 |
agaattgaagtattataattgtaagtacacaacatttgaacaacaaagagattgttgatatgattctcactattttgtccaatagttgacctcctgatac |
53615585 |
T |
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| Q |
218 |
atattccatcacaatgtatatttttgttt |
246 |
Q |
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| T |
53615586 |
atattccatcacaatgtatatttttgttt |
53615614 |
T |
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