View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6254_low_24 (Length: 203)
Name: NF6254_low_24
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 48667667 - 48667498
Alignment:
| Q |
19 |
gtttcgcatactggtaagaataattggactggcacttcctggtttttcggctcattgtcccacagattatgtcaactctatcagacttgggaaggaaagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48667667 |
gtttcgcatactggtaagaataattggactggcacttcctggtttttcggctcattgtcccacagattatgtcaactctatcagacttgggaaggaaagc |
48667568 |
T |
|
| Q |
119 |
tccattcacatgtcttctatctaagaattctaagaagatctctcatgtgttatgtcggccttgttctctg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48667567 |
tccattcacatgtcttctatctaagaattctaagaagatctctcatgtgttatgtcggccttgttctctg |
48667498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 8600314 - 8600229
Alignment:
| Q |
19 |
gtttcgcatactggtaagaataattggactggcacttcctggtttttcggctcattgtcccacagattatgtcaactctatcagac |
104 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8600314 |
gtttcgcatattggtaaggataataggactgttacttcctggtttttcggctcattgtcccacagattatgtcaactttatcagac |
8600229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University