View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_5 (Length: 411)
Name: NF6254_low_5
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 40329319 - 40329626
Alignment:
| Q |
9 |
cagaacctgtgcaatgaaattgatagaatcaaaaaggagaatgatagcatgcaaattgatctcaggtattatacaaacatttttatttatatgtattgcc |
108 |
Q |
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| T |
40329319 |
cagaaccttagcaatgaaattgatagaatcaaaaaggagaatgatagcatgcaaattgatctcaggtattatacaaacatttttatttatatgtattgcc |
40329418 |
T |
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| Q |
109 |
ctagctagctataatcaaaatttataaatatcattgatcaagggtacatatatatgttaatttcaggcacttgaagggagaggatattacctcactgaat |
208 |
Q |
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| T |
40329419 |
ctagctagctataatcaaaatttataaatatcattgatcaagggtacatatatatgttaatttcaggcacttgaagggagaggatattacctcactgaat |
40329518 |
T |
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| Q |
209 |
tacaaagagctgatggcccttgaggaatcccttgaaaatggtcttactggcgtccgtgacaaaaaggtaattaannnnnnnnaatgtttaatcatagtaa |
308 |
Q |
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| T |
40329519 |
tacaaagagctgatggcccttgaggaatcccttgaaaatggtcttactggcgtccgtgacaaaaaggtaattaattttttttaatgtttaatcatagtaa |
40329618 |
T |
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| Q |
309 |
taactatt |
316 |
Q |
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|||||||| |
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| T |
40329619 |
taactatt |
40329626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 40329684 - 40329724
Alignment:
| Q |
371 |
gtcctacagatggaagtgcataggatgttcaagagaaatgt |
411 |
Q |
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| T |
40329684 |
gtcctacagatggaagtgcataggatgttcaagagaaatgt |
40329724 |
T |
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