View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6254_low_9 (Length: 366)
Name: NF6254_low_9
Description: NF6254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6254_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 30333850 - 30334200
Alignment:
| Q |
1 |
ttattattctcaatttttaattagtacaaagttgttttcaatttggttgaaaaccttgttgttgaagcgaatttcgttatttttctcaagtcgttgcgct |
100 |
Q |
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| T |
30333850 |
ttattattctcaatttttaattagtacaaagttgttttcaatttggttgaaaaccttgttgttgaagcgaatttcgttatttttctcaagtcgttgcgct |
30333949 |
T |
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| Q |
101 |
ttcactgtctcgtgactcgttgttgtgactcgttgattcactcgtttgactccttttgaagcaacccttttgttttcttaatctatttcccttgatgggt |
200 |
Q |
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| T |
30333950 |
ttcactgtctcgtgactcgttgttgcgactcgttgattcactcgtttgactccttttgaagcaacccttttgttttcttaatctatttcccttgatgggt |
30334049 |
T |
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| Q |
201 |
tttgaattttattgttggaatcagctaattcaattgggaactgggttgtgacataacattcttttcagacatggtttgtttggggtttgatatggttgag |
300 |
Q |
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| T |
30334050 |
tttgaattttattgttggaatcagctaattcaattgggaactgggttgtgacataacattcttttcagacatggtttgtttggggtttgatatggttgag |
30334149 |
T |
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| Q |
301 |
gttgaagctcaaaggttggaactttgtttggttaagaggaaggaagttggt |
351 |
Q |
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| T |
30334150 |
gttgaagctcaaaggttggaactttgtttggttaagaggaaggaagttggt |
30334200 |
T |
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