View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6255_high_2 (Length: 306)
Name: NF6255_high_2
Description: NF6255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6255_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 33442492 - 33442785
Alignment:
| Q |
15 |
atatatacacataaaatttcaggttaaggggattgtcacaaacggctaaggacggcttggcagaatttgaatattaatttannnnnnnnggttacaagaa |
114 |
Q |
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| T |
33442492 |
atatatacacatataatttcagggcaaggggattgtcacaaacggctaaggacggcttggcagaatttgaatattaatttattttttt-ggttacaagaa |
33442590 |
T |
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| Q |
115 |
tttgaatattaatttgatttaactacaaattataatatcgtattcagactaagataagaaataacgtaatattgtaattgtaaa---------------- |
198 |
Q |
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| T |
33442591 |
tttgaatattaatttgatttaactacaaattataatatcgtatttagactaagataagaaataacgtaatattgtaattggaaataatgttgaggtacgg |
33442690 |
T |
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| Q |
199 |
taatagttccaacttttgcaatagccatgaggcttgaaccttctcttgttcatatgttgcttctcgtagataaatatagcaattttattttttat |
293 |
Q |
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| T |
33442691 |
taatagtttcaatttttgcaatagccatgaagcttgaaccttctcttgttcatatgttgcttctcgtagataaatatagcaattttattttttat |
33442785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 33452748 - 33452829
Alignment:
| Q |
15 |
atatatacacataaaatttcaggttaagggg--attgtcacaaacggctaaggacggcttggcagaatttgaatattaattt |
94 |
Q |
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| T |
33452748 |
atatatacacataaaatatcagggtgaggggggattgcaacaaacggctatggacggcttggcagaatttgaatattaattt |
33452829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 33452811 - 33452880
Alignment:
| Q |
111 |
agaatttgaatattaatttgatttaactacaaattataatatcgtattcagactaagataagaaataacgta |
182 |
Q |
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| T |
33452811 |
agaatttgaatattaatttgatttaaccacaaa-tataatattgcatgcagact-tgataagaaataacgta |
33452880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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