View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6255_low_3 (Length: 269)
Name: NF6255_low_3
Description: NF6255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6255_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 42510709 - 42510939
Alignment:
| Q |
22 |
cagtcgatgttctcgttcttcaacaccgaatccaaaccaaacgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaa |
121 |
Q |
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| T |
42510709 |
cagtcgatgttctcgttcttcaacatcgaatccaaaccaaacgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatctgaa |
42510808 |
T |
|
| Q |
122 |
tcgttcgttcttacctcatgaacatgacaactccaaacctggaattagatccactgtcaccatcaccatcatcattaacaccttattttgaatatgacac |
221 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42510809 |
tcgttcgttcttacctcatgaacatgacaactccagatctggaatcagatccactg------tcaccatcatcattaacaccttattttgaatatgacac |
42510902 |
T |
|
| Q |
222 |
tcactccttcactcctcgtgttcttatcactattcat |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42510903 |
tcactccttcactcctcgtgttcttatcactattcat |
42510939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 61 - 258
Target Start/End: Complemental strand, 19465643 - 19465446
Alignment:
| Q |
61 |
aacgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaatcgttcgttcttacctcatgaacatgacaactccaaacc |
160 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | | |
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| T |
19465643 |
aacgttcgttcgttcttaacctcatggacatgacaactctgaattcaacactgaatctgaatcgtttgttcttacctcatgaacatgacaactccagatc |
19465544 |
T |
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| Q |
161 |
tggaattagatccactgtcaccatcaccatcatcattaacaccttattttgaatatgacactcactccttcactcctcgtgttcttatcactattcat |
258 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19465543 |
tggaatcagatccaccgtcaccaccaccatcatcattaacaccttattttgaatatgacactcactccttcactcctcgtgttcttatcactattcat |
19465446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 36510426 - 36510652
Alignment:
| Q |
24 |
gtcgatgttctcgttcttcaacaccgaatccaaaccaaacgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaatc |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||| | |||| |
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| T |
36510426 |
gtcgatgttctcgttcttcaacaccgaatccaaaccaaacctttgttcgttcttaacctcatgaacatgacaactatgaattcaacactgaatctaaatc |
36510525 |
T |
|
| Q |
124 |
gttcgttcttacctcatgaacatgacaactccaaacctggaattagatccactgtcaccatcaccatcatcattaacaccttattttgaatatgacactc |
223 |
Q |
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||||||||||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36510526 |
gttcgttcttacctcatgaacataacaactccagatctgaaatcagatccactgtcaccatcaccatcatcattaacaccttattttgaatatgacactc |
36510625 |
T |
|
| Q |
224 |
actccttcactcctcgtgttcttatcactattcat |
258 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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|
| T |
36510626 |
ac--------tcctcgtgttcttatcactattcat |
36510652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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