View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6257_high_3 (Length: 242)
Name: NF6257_high_3
Description: NF6257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6257_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 4100946 - 4101158
Alignment:
| Q |
15 |
aactagggaggatatggactttgcatcatttgcatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtgttgtttctcatttt |
114 |
Q |
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| T |
4100946 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcctaaactgagggaatgtgaaggatggtgtgttgtttctcatttt |
4101045 |
T |
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| Q |
115 |
ggccaccctaacgaagcagacatcaagataatttatgattttaattagattaagttttggaaggagttaagttttgcattgacaatgaaattgaagttga |
214 |
Q |
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| T |
4101046 |
ggccaccctaacgaagcagacatcaagataatttatgattttaattagattaagttttggaaggagttaagttttgcattgacaatgaaattgaagttga |
4101145 |
T |
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| Q |
215 |
aaaactatgtttt |
227 |
Q |
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||||||||||||| |
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| T |
4101146 |
aaaactatgtttt |
4101158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 4078191 - 4078405
Alignment:
| Q |
15 |
aactagggaggatatggactttgcatcatttgcatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtgttgttt--ctcatt |
112 |
Q |
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| T |
4078191 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtgttgtttgtctcatt |
4078290 |
T |
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| Q |
113 |
ttggccaccctaacgaagcagacatcaagataatttatgattttaattagattaagttttggaaggagttaagttttgcattgacaatgaaattgaagtt |
212 |
Q |
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| T |
4078291 |
ttggccaccctaataaagcaggcatcaagattatttatgattttaattagattaagttttggaaggagttaagttttgcattgacaatgaaattgaagtt |
4078390 |
T |
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| Q |
213 |
gaaaaactatgtttt |
227 |
Q |
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| T |
4078391 |
gaaaaactatgtttt |
4078405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 13825292 - 13825352
Alignment:
| Q |
160 |
tagattaagttttggaaggagtt-aagttttgcattgacaatgaaattgaagttgaaaaac |
219 |
Q |
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| T |
13825292 |
tagattaagttttggaaggagttaaagttttgcattgataataaacttaaaattgaaaaac |
13825352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 4502677 - 4502620
Alignment:
| Q |
18 |
tagggaggatatggactttgcatcatttgcatctcaagttcttggaattcctcccaaa |
75 |
Q |
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| T |
4502677 |
tagggaggatatggactccgcatcagttgtacctaaagttcatggaattcctcccaaa |
4502620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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