View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6257_high_4 (Length: 238)
Name: NF6257_high_4
Description: NF6257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6257_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37338219 - 37338444
Alignment:
| Q |
1 |
ttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaaccattccttaatgctaaacccttatttcctgcttctttgtttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37338219 |
ttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaatcattcctttatgctaaacccttatttcctgcttctttgtttta |
37338318 |
T |
|
| Q |
101 |
ttgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacgattc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338319 |
ttgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacgattc |
37338418 |
T |
|
| Q |
201 |
cgtttttcttagaaatagtagctgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
37338419 |
cgtttttcttagaaatagtagctgat |
37338444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 11299819 - 11299690
Alignment:
| Q |
97 |
tttattgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacg |
196 |
Q |
| |
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||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11299819 |
tttattgagcaatgttctgttagcaatatttctgtatctccttctgaagtaatctacctattaagtagttgatatttgtttgatttgatatccatgtacg |
11299720 |
T |
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| Q |
197 |
attccgtttttcttagaaatagtagctgat |
226 |
Q |
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|||||||||| ||| ||||||| ||||||| |
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| T |
11299719 |
attccgttttcctttgaaatagcagctgat |
11299690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 11299955 - 11299859
Alignment:
| Q |
4 |
tgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaaccattccttaatgctaaacccttatttcctgcttctttgtttta |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
11299955 |
tgtagctcctcccttggctctctgctttcttttaaaagggttctcatgctaaaccattcgtttatgctaaatccttatttcctgcttctttgtttta |
11299859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15297033 - 15297258
Alignment:
| Q |
1 |
ttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaaccattccttaatgctaaacccttatttcctgcttctttgtttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
15297033 |
ttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaaccattcctttatgccaaacccttatttcctgcttctttgtttta |
15297132 |
T |
|
| Q |
101 |
ttgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacgattc |
200 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15297133 |
ttgagcaatgttccgttagcaatttttttgtatctccttatgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacgattc |
15297232 |
T |
|
| Q |
201 |
cgtttttcttagaaatagtagctgat |
226 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
15297233 |
cgtttttcttagaaatagcagctgat |
15297258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 47967748 - 47967627
Alignment:
| Q |
97 |
tttattgagcaatgttccgttaacaatatttttgtatctccttctgaaataatctacctattaagtagttgatatttgtttgattcgatatccatgtacg |
196 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
47967748 |
tttattgagcaatgttttgttagcaatatttttgtatctccttctgaaataatctacttattaagtagttgatatttgtttgatttgatatccatttacg |
47967649 |
T |
|
| Q |
197 |
attccgtttttcttagaaatag |
218 |
Q |
| |
|
|||||||||| |||| |||||| |
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| T |
47967648 |
attccgttttccttaaaaatag |
47967627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47967892 - 47967789
Alignment:
| Q |
1 |
ttctgtagctccttccttggctctctgctttcttttaaaagggttctcatgctaaaccattc----cttaatgcta-aacccttatttcctgcttctttg |
95 |
Q |
| |
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||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||| |
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| T |
47967892 |
ttctgtagctcctcccttggctctttactttcttttaaaagggttctcatgctaaaaccttcgtggtttaatgagataacccttatttcctgcttctttg |
47967793 |
T |
|
| Q |
96 |
tttt |
99 |
Q |
| |
|
|||| |
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|
| T |
47967792 |
tttt |
47967789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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