View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6257_low_1 (Length: 454)

Name: NF6257_low_1
Description: NF6257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6257_low_1
NF6257_low_1
[»] chr1 (2 HSPs)
chr1 (20-454)||(36123735-36124172)
chr1 (296-332)||(36122295-36122331)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 36124172 - 36123735
Alignment:
Q  20 aatcgctgaatcaattttgagttgctcaaattcttgagttgctaaatatgaggttaaaatggtgattgattgtaaaccgttaaggatttgtcacatctcg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36124172 aatcgctgaatcaattttgagttgctcaaattcttgagttgctaaatatgaggttaaaatggtgattgattgtaaaccgttaagaatttgtcacatctcg 36124073  T
Q  120 ataatactattctatggaaaatacaccgtaaaagattggaaagacccacaaaaagaacttgcactaaaatttatatatactactaataataggtaaatac 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||    
T  36124072 atagtactattctatggaaaatacaccgtaaaagattggaaagacccacaaaaagtacttgcactaaaatttatatataccactaataataggtaaacac 36123973  T
Q  220 aactactgttatccaatcaaagcacgaattagcacctcaaaaatataaccattttttg-aagac--nnnnnnnngtatgtagtttatagtaatttgaaat 316  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||          ||||||||||||||||||||||||||    
T  36123972 aactactgttatccaatcaaagcacgaattagcacctaaaaaatataaccattttttgaaagacaaaaaaaaatgtatgtagtttatagtaatttgaaat 36123873  T
Q  317 atctaagtatattctacaaattgatgacttacatatagtctcaaaacgatatagtttaagtagtgtgtgttgtcttctttgcctaagcatatgatttctc 416  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36123872 gtccaagtatattctacaaattgatgacttacatatagtctcaaaacgatatagtttaagtagtgtgggttgtcttctttgcctaagcatatgatttctc 36123773  T
Q  417 atttgttactcactctttcttaagtaaattcttgagtc 454  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36123772 atttgttactcactctttcttaagtaaattcttgagtc 36123735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 36122331 - 36122295
Alignment:
Q  296 tagtttatagtaatttgaaatatctaagtatattcta 332  Q
    ||||||||||||||||||||  |||||||||||||||    
T  36122331 tagtttatagtaatttgaaacgtctaagtatattcta 36122295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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