View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_high_10 (Length: 425)
Name: NF6259_high_10
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 52630919 - 52630508
Alignment:
| Q |
1 |
attgcggtggttcgaccagcgtcggccaatgacgtggcaagggtagttaaagcggcgtataaatggcagaagt---ttgcggtgtcagcgagaggacacg |
97 |
Q |
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| T |
52630919 |
attgcggtggttcgaccagcgtcggccaatgacgtggcaagggtagttaaagcggcgtataaatggcagcagtactttgcggtgtcagcgagaggacacg |
52630820 |
T |
|
| Q |
98 |
gacactcaataaacggacaagcagatacagggatgaaaggagtggtgattgaaatgggaaaaggaggtgtaggaattaagggtcctctaatttgggagaa |
197 |
Q |
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| T |
52630819 |
gacactcaataaacggacaagcggatacaaggatgaaaggagtggtgattgaaatgggaaaaggaggtgtaggaattaagggtcctctagtttgggagaa |
52630720 |
T |
|
| Q |
198 |
agaaatgtatgtggatgtttggggtggtgaattatggatacatgttctgaagtcaacattggagtatgggttagcacctatgtcttggactgattacttg |
297 |
Q |
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| T |
52630719 |
agaaatgtatgtggatgtttggggtggtgaattatggatacatgttctgaaggcaacattggagtatgggttagcacctatgtcttggactgattacttg |
52630620 |
T |
|
| Q |
298 |
tatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttgagctagatgtagtta |
397 |
Q |
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| T |
52630619 |
tatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttgagctagatgtagtta |
52630520 |
T |
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| Q |
398 |
caggtacttaat |
409 |
Q |
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|||||| ||||| |
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| T |
52630519 |
caggtatttaat |
52630508 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 52454641 - 52454570
Alignment:
| Q |
280 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttc |
351 |
Q |
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| T |
52454641 |
tcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttc |
52454570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 17243437 - 17243504
Alignment:
| Q |
280 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaac |
347 |
Q |
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| T |
17243437 |
tcttggactgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaac |
17243504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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