View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_high_17 (Length: 239)
Name: NF6259_high_17
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9652889 - 9653112
Alignment:
| Q |
1 |
ccattttagctagactcgtttgttttgggttggggtaacatcataccacatatatgtatgtcactaatcactatttatatccacctaaaatcacaaccgt |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9652889 |
ccattttagctaaactcatttgttttgggttggggtaacatcataccacatatatgtatgtcactgatcactatttatatccacctaaaatcacaaccgt |
9652988 |
T |
|
| Q |
101 |
cccattgtggaaaggtggtcagtgaaccagtgacggaacgacatgaaatatggcggtagtggcaagaaagatatagatatcgacgacgttgtcaatgcag |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9652989 |
cccattgtggaaaggtggtcattgaaccagtgacggaacgacatgaaatatggcggtagtggcaagaaagatatagatatcgacgacgttgtcaatgcag |
9653088 |
T |
|
| Q |
201 |
aacaaaaactgcaccatcatggtg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
9653089 |
aacaaaaactgcaccatcatggtg |
9653112 |
T |
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