View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_high_8 (Length: 435)
Name: NF6259_high_8
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 418
Target Start/End: Original strand, 36681928 - 36682342
Alignment:
| Q |
15 |
tctacgcatcaagtattgtgggactctcaaattcacaaccgtcactagcattggtctatgtcnnnnnnnnnct------------agagagcgtattttt |
102 |
Q |
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| T |
36681928 |
tctacgcatcaagtattgtgggactctcgaattcacgaccgtcactagcattggtctatgtctttttttttattcttttttttatagagagcgtatgttt |
36682027 |
T |
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| Q |
103 |
atgtctagtgacgggggatatggcttatagctaggtttaaactcattgtctctattgataaacnnnnnnnnttgtgattttgcaattgagttagaaacat |
202 |
Q |
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| T |
36682028 |
atgtctagtgacgggggatatggcttatagctaggtttaaactcattgtctctattgataaacaaaaaaa-ttgtgattttgcaattgagttagaaacat |
36682126 |
T |
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| Q |
203 |
atttttccggacaaggtaatccaatgtcaccataaatttattaggaaaaaattattgagcatagaaacatgactaatagtagtgtagatctatggattca |
302 |
Q |
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| T |
36682127 |
atttttccggacaaggtaatccaatgtcaccataaatttattaggaaaaaattattgagcatagaaacatgactaatagtagtgtagatctatggattca |
36682226 |
T |
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| Q |
303 |
gtctcttctcattgagctcaaagttcaatttcatactcctaatattctctattacaacttaagtgttttggtctagattcataatttgattgttcacaac |
402 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682227 |
gtctcttctcattgagctcaaagttcaatttcatagtcctaatattctctattacaacttaagtgttttggtctagattcataatttgattgttcacaac |
36682326 |
T |
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| Q |
403 |
agaattaagcatattg |
418 |
Q |
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| T |
36682327 |
agaattaagcatattg |
36682342 |
T |
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