View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_low_11 (Length: 430)
Name: NF6259_low_11
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 265 - 413
Target Start/End: Original strand, 37404491 - 37404643
Alignment:
| Q |
265 |
tcgtattcataagttattttcagtttattattataagtttttcataattgttcataaacatttcatcatta----taggccttatgcttagaggttgcat |
360 |
Q |
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| T |
37404491 |
tcgtattcataagttattttcagtttattattataagtttttcataattgttcataaacatttcgccattacaggcaggccttatgcttagaggttgtat |
37404590 |
T |
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| Q |
361 |
aacatcataaaatattcatcatacctgagactaagtcaaaaggacttatgctg |
413 |
Q |
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| T |
37404591 |
aacatgataaaatattcatcatacctgagactaagtcaaaaggacttatgctg |
37404643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 37404322 - 37404434
Alignment:
| Q |
10 |
acatcatcataaaatgggaatggatcatctcatgtgacatgatggtccatcttaaaatgaattaaggagtaggtttcgatctttatattatttcaatttc |
109 |
Q |
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| T |
37404322 |
acattatcataaaatgggaatggatcatctcatgtgacatgatggtccatcttaaaatgaattaaggaataggtttcgatctttatattatttcaatttc |
37404421 |
T |
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| Q |
110 |
aatctagtaagga |
122 |
Q |
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| T |
37404422 |
aatcaagtaagga |
37404434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 37404433 - 37404488
Alignment:
| Q |
147 |
gactagttcaagaagtttgtgtgaattagggtatgtttgaattgatttatttaaaa |
202 |
Q |
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| T |
37404433 |
gactagatcaagaagtttgtgtgaattaaggtatgtttgaattgatttatttaaaa |
37404488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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