View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_low_18 (Length: 243)
Name: NF6259_low_18
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 14435523 - 14435739
Alignment:
| Q |
19 |
gatccatgcaacaattcctccagactgtgttgatcgtttccagaatacttttcacgagaaccgtgtttacttgatctctaatttcaaggttttaccaaat |
118 |
Q |
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| T |
14435523 |
gatccaagcaacaattcctccagactgtgttgatcgtttccagaatacttttcatgagaaccgtgtttacatgttctctaatttcaaggttttaccaaat |
14435622 |
T |
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| Q |
119 |
gatcgttctacgagggtcacttcccataatcataggctgaaactcttggaggagactgtggttgtcaatgatgatggttatatcatccaaaggtttggtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14435623 |
gatcgttctacgagggtcacttcccataatcataggctgaaactctgggaggagactgtggttgtcaatcatgatggttatatcatccaaaggtttggtt |
14435722 |
T |
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| Q |
219 |
tgtccttcttttcatct |
235 |
Q |
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| T |
14435723 |
tctccttcttttcatct |
14435739 |
T |
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