View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_low_20 (Length: 238)
Name: NF6259_low_20
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 45974995 - 45974826
Alignment:
| Q |
19 |
cataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacat |
118 |
Q |
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| T |
45974995 |
cataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacat |
45974896 |
T |
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| Q |
119 |
gctatttaggttcacattgaacctttttcctgctacaggggcgctactatgaaccttatttgacaaagtt |
188 |
Q |
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| T |
45974895 |
gctatttaggttcacattgaacctttttcctgctacaggggcgctactatgaatcttatttgacaaagtt |
45974826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 45970455 - 45970300
Alignment:
| Q |
23 |
ggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacatgcta |
122 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| || | ||||||||||| |||||||| ||||||||| ||||||| |
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| T |
45970455 |
ggtcaggatgttaataccgtgaaccttattaaggaagaaataactgtaaccaaactcttatcaatagtgctacattaaaattatgttacgcggcatgcta |
45970356 |
T |
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| Q |
123 |
tttaggttcacattgaacctttttcctgctacaggggcgctactatgaaccttatt |
178 |
Q |
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| T |
45970355 |
tttaggttcacagtgaatattgttcctgctattgcggcgctactgtgaaccttatt |
45970300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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