View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6259_low_23 (Length: 232)
Name: NF6259_low_23
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12954272 - 12954490
Alignment:
| Q |
1 |
tcaatttttacacaaaaccccnnnnnnngggactttttctttccatttactcgttcaaatttctatatttttgaccaattgggtcaatttcgacctgatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12954272 |
tcaatttttacacaaaacccctttttttgggactttttctttccatttacccgttcaaatttctatatttttgaccaattgggtcaatttcgacctgatc |
12954371 |
T |
|
| Q |
101 |
cagttataatcgtgttgaattgtctgaaactgatttcaattttgtgtgaagtttggaaataaagaagggtatgttttctacctcttatataggttttagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12954372 |
cagttataatcgtgttgaattgtctgaaactgatttcaattttgtgtgaagtttggaaataaagaagggtatgttttctacctcttatataggttttagg |
12954471 |
T |
|
| Q |
201 |
gttaattttggtgctgttg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12954472 |
gttaattttggtgctgttg |
12954490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University