View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_low_3 (Length: 785)
Name: NF6259_low_3
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 64 - 768
Target Start/End: Original strand, 48876664 - 48877367
Alignment:
| Q |
64 |
acccctttttctatagggctagtcactagagatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
163 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48876664 |
acccctttttctatagggctagtcactagtgatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
48876763 |
T |
|
| Q |
164 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48876764 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcattgcaaaattattaagaaatgccagtagatatgattt-accaaa |
48876862 |
T |
|
| Q |
264 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacnnnnnnnnntctattcg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48876863 |
tggggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatctggacaaaaaaaaatctattcg |
48876962 |
T |
|
| Q |
364 |
tatagccatgaacttactggccatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgccgagttctgtcag |
463 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48876963 |
tatagccatgaacttactggcgatctcgctgaagttcagagcaacctctttgcaatgcaccggattgccacagtgcctgctccatgacgagttctgtcag |
48877062 |
T |
|
| Q |
464 |
taaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtttggctacactatttgaagcttattcaaaccag |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48877063 |
taaacccttcttaatttgttactttgcaactatcttcactacaacctgtatgaccaagcagagaagtttggctccactatttgaagcttattcaaaccag |
48877162 |
T |
|
| Q |
564 |
ttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag |
663 |
Q |
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| T |
48877163 |
ttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag |
48877262 |
T |
|
| Q |
664 |
tgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaataccggaactggaactgtctttatgcaatacg |
763 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48877263 |
tgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaataccggaactggaattgtctttatgcaatacg |
48877362 |
T |
|
| Q |
764 |
aaatg |
768 |
Q |
| |
|
||||| |
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|
| T |
48877363 |
aaatg |
48877367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 48876557 - 48876609
Alignment:
| Q |
13 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
65 |
Q |
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| T |
48876557 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
48876609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 577 - 698
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
577 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
675 |
Q |
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||||||||||| | ||||||||||| ||||| |||||||||| |||||| ||||| | |||||||||||||||||||| | | || |||| | ||||| |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
|
| Q |
676 |
ttttcgaattcaatgtaacaagt |
698 |
Q |
| |
|
||||| ||||| |||||||||| |
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|
| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 8381420 - 8381353
Alignment:
| Q |
267 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgtta |
334 |
Q |
| |
|
||||||||||||| |||| ||||| ||| | |||| |||||| |||| ||||||||||||||||||| |
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|
| T |
8381420 |
ggccaaagcttgttcctcagctagcattgatcggctcaagaacttgaatagaagaactgttgatgtta |
8381353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 531
Target Start/End: Complemental strand, 8381008 - 8380942
Alignment:
| Q |
465 |
aaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
531 |
Q |
| |
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|||| |||||||||||||||||| | ||||| || ||||||||||| |||| || ||||||||||| |
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| T |
8381008 |
aaacacttcttaatttgttacttcgtaactacctccactacaacctatatgatcaggcagagaagtt |
8380942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 572 - 735
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
572 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
670 |
Q |
| |
|
|||| ||||||||||| | ||||| ||||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||| ||| || |||| || |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
|
| Q |
671 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
735 |
Q |
| |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 53456860 - 53456785
Alignment:
| Q |
267 |
ggccaaagcttgtccctcggctagttttgcttggctgaagaacgtgaacagaagaactgttgatgttactgcatct |
342 |
Q |
| |
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||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
53456860 |
ggccaaagcttgttcttcagctagtgttgcttggctgaagaatgtgaacagaagaactgttgatgttattgcatct |
53456785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 53456480 - 53456409
Alignment:
| Q |
460 |
tcagtaaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
531 |
Q |
| |
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|||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
53456480 |
tcaggaaacccttcttaatttgctgcttcgcaactatcttcactacaacctatatgaccaggcagagaagtt |
53456409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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