View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6259_low_5 (Length: 583)

Name: NF6259_low_5
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6259_low_5
NF6259_low_5
[»] chr7 (2 HSPs)
chr7 (9-390)||(27680359-27680731)
chr7 (427-565)||(27680769-27680906)
[»] chr3 (1 HSPs)
chr3 (474-558)||(21891217-21891301)
[»] chr5 (2 HSPs)
chr5 (429-558)||(34660647-34660773)
chr5 (511-558)||(2234619-2234666)
[»] chr4 (3 HSPs)
chr4 (429-558)||(495646-495767)
chr4 (429-558)||(18193307-18193428)
chr4 (429-558)||(46151504-46151629)
[»] chr1 (1 HSPs)
chr1 (511-558)||(48919815-48919862)
[»] chr8 (1 HSPs)
chr8 (511-558)||(21351936-21351982)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 9 - 390
Target Start/End: Original strand, 27680359 - 27680731
Alignment:
Q  9 gaagaaaatatgtctaaacaaagattgcctccaccaagtatgacaagattctgacaggtcatgttttccaaatagaaaatagttgtggtcaccagtacca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27680359 gaagaaaatatgtctaaacaaagattgcctccaccaagtatgacaagattctgacaggtcatgttttccaaatagaaaatagttgtggtcaccagtacca 27680458  T
Q  109 acagtagtggaataaataaatt-aactactcacttaaatttcaannnnnnnnnnnnnnnnatgtaatatgaatttcaaattttttacaaggaatattagt 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||| |    
T  27680459 acagtagtggaataaataaattaaactactcacttaaatttcaa--ttttttttttttttatgtaatatgaatttcaaattttttacaaggaatattaat 27680556  T
Q  208 tttttgacnnnnnnnnnnnctaattagttagtacccttcnnnnnnnnnnnnntcattcatctagattatatactaacagccgaattttaaattatcagat 307  Q
    ||||||||           ||||||||||||||||||||             |||||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  27680557 tttttgac----aaaaaaactaattagttagtacccttc--aaaaaaaaaaatcattcatctggattatatacttacaaccgaattttaaattattagat 27680650  T
Q  308 ctcttctcttaaaaatcataaggttaacnnnnnnnnnncattcatctaccttgtagcctatcctaaatttaaattaccaactc 390  Q
    |||||||||||||||||| |||||||||          ||||||||||||||||||||||| |||||||||||||||||||||    
T  27680651 ctcttctcttaaaaatcagaaggttaac--aaaaaaaacattcatctaccttgtagcctattctaaatttaaattaccaactc 27680731  T

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Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 427 - 565
Target Start/End: Original strand, 27680769 - 27680906
Alignment:
Q  427 ataagcatattgatcggtcaatgtaaactcctaattcttgactctgagagaggacaccaaaagcttttgccattctatctctatctattcaagggatgag 526  Q
    ||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27680769 ataagcatattgattagtcaatataaactcctaattcttgactc-gagagaggacactaaaagcttttgccattctatctctatctattcaagggatgag 27680867  T
Q  527 ggacaaaggttttggttttttcatgttgtcaactagttg 565  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27680868 ggacaaaggttttggttttttcatgttgtcaacaagttg 27680906  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 474 - 558
Target Start/End: Complemental strand, 21891301 - 21891217
Alignment:
Q  474 gagaggacaccaaaagcttttgccattctatctctatctattcaagggatgagggacaaaggttttggttttttcatgttgtcaa 558  Q
    |||||||||||||| || | |||| ||| ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21891301 gagaggacaccaaaggcctctgcccttccatctctaactattcaagggatgggggacaaaggttttggtttttttatgttgtcaa 21891217  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 558
Target Start/End: Complemental strand, 34660773 - 34660647
Alignment:
Q  429 aagcatattgatcggtcaatgtaaactcctaattcttgactctgagagaggacaccaaaagcttttgccattctatctctatctattcaagggatgaggg 528  Q
    |||||||||||   |||||||| |  |||||||||||||||    |||||||||||||| || | |||| ||| ||| ||| |||||||||||||| |||    
T  34660773 aagcatattgactagtcaatgtcaggtcctaattcttgactg---gagaggacaccaaaggcctctgcctttccatccctagctattcaagggatggggg 34660677  T
Q  529 acaaaggttttggttttttcatgttgtcaa 558  Q
    ||| ||||||||||||||||||||||||||    
T  34660676 acagaggttttggttttttcatgttgtcaa 34660647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 2234666 - 2234619
Alignment:
Q  511 ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaa 558  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2234666 ctattcaagggatgggggacagaggttttggttttttcatgttgtcaa 2234619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 558
Target Start/End: Complemental strand, 495767 - 495646
Alignment:
Q  429 aagcatattgatcggtcaatgtaaactcctaattcttgactctgagagaggacaccaaaagcttttgccattctatctctatctattcaagggatgaggg 528  Q
    |||||||||||  ||||||||| |  |||||||||||||||    |||||||||||||| || | |||| |||     ||| |||||||||||||| |||    
T  495767 aagcatattgactggtcaatgtcaggtcctaattcttgactg---gagaggacaccaaaggcctctgcccttc-----ctagctattcaagggatggggg 495676  T
Q  529 acaaaggttttggttttttcatgttgtcaa 558  Q
    ||| ||||||||||||||||||||||||||    
T  495675 acagaggttttggttttttcatgttgtcaa 495646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 558
Target Start/End: Complemental strand, 18193428 - 18193307
Alignment:
Q  429 aagcatattgatcggtcaatgtaaactcctaattcttgactctgagagaggacaccaaaagcttttgccattctatctctatctattcaagggatgaggg 528  Q
    |||||||||||  ||||||||| |  |||||||||||||||    |||||||||||||| || | |||| |||     ||| |||||||||||||| |||    
T  18193428 aagcatattgactggtcaatgtcaggtcctaattcttgactg---gagaggacaccaaaggcctctgcccttc-----ctagctattcaagggatggggg 18193337  T
Q  529 acaaaggttttggttttttcatgttgtcaa 558  Q
    ||| ||||||||||||||||||||||||||    
T  18193336 acagaggttttggttttttcatgttgtcaa 18193307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 558
Target Start/End: Original strand, 46151504 - 46151629
Alignment:
Q  429 aagcatattgatcggtcaatgtaaactcctaattcttgactctgagagaggacaccaaaagcttttgccattctatctctatctattcaagggatgaggg 528  Q
    ||||||||||||  ||| |||| |  |||||||||||||||    |||||||||||||| || ||| || ||| ||| ||| |||||||||||||| |||    
T  46151504 aagcatattgattagtcgatgtcaggtcctaattcttgactg---gagaggacaccaaaggcattttcccttccatccctagctattcaagggatggggg 46151600  T
Q  529 acaaaggttttggttttttcatgttgtcaa 558  Q
    ||||| ||||||||||||| ||||||||||    
T  46151601 acaaatgttttggtttttt-atgttgtcaa 46151629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 558
Target Start/End: Original strand, 48919815 - 48919862
Alignment:
Q  511 ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaa 558  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  48919815 ctattcaagggatgggggacagaggttttggttttttcatgttgtcaa 48919862  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 21351982 - 21351936
Alignment:
Q  511 ctattcaagggatgagggacaaaggttttggttttttcatgttgtcaa 558  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21351982 ctattcaagggatg-gggacagaggttttggttttttcatgttgtcaa 21351936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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