View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6259_low_7 (Length: 532)
Name: NF6259_low_7
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 1504104 - 1504606
Alignment:
| Q |
11 |
cagagacacgtcgcgtttgcagaatctatatactctacttttctctgacagcaagtttgatgtgttctcggttaataatttagttaaaggtttggtaaac |
110 |
Q |
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| T |
1504104 |
cagaaacacgtcgcgtttgcagaatctatatactctacttttctctaacaacaagtttgatgtgttcttggttaataatttagttaaaggtttggtaaac |
1504203 |
T |
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| Q |
111 |
catttagctaccttccaatccttcttcggattatatgatcttaaatgttatagggcgttgcaggatgtgttgacgtgtttttacacagttcaaattatat |
210 |
Q |
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| T |
1504204 |
catttagctaccttccaatcattcttcggattatacgatcttaaatgttatagggcgttgcaggatgtgttgacgtgtttttacacgattcgaattatat |
1504303 |
T |
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| Q |
211 |
aattcaaaatattgtagaacgcacgagccaagaccataaactctnnnnnnnnnnctcagaccaccgaacaccacacaagtcacacatggcccaacccaaa |
310 |
Q |
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| T |
1504304 |
aattcaaaatattgtaaaacgaacgagctatgaccataaactctaaaaaaaaa-ctcacaccaccggacaccacacaagtcacacatggcccaacccaaa |
1504402 |
T |
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| Q |
311 |
tgaacccctcaattgtattaacttttacttttgcatttcattctccatcgctatttcaacaataggaaaaacaaattactagagtggtataatcttatga |
410 |
Q |
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| T |
1504403 |
tgaacccctcaattgtattaacttttacttttgcatttcattctccatcgctatttcaacaataggaaaaacaaattactagagtggtataatcttatga |
1504502 |
T |
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| Q |
411 |
aaattcataaaagcgggaagatacatcttatattagttttaggccagatttatatataaaagttctcacatcaagaacaaccaatgcaaatcattaatcc |
510 |
Q |
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| T |
1504503 |
aaattcataaaagcgggaagatacatcttatattagttttaggccagatttatatataaaagttctcacatcaagaacaaccaatgcaaatcattaatcc |
1504602 |
T |
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| Q |
511 |
attg |
514 |
Q |
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| T |
1504603 |
attg |
1504606 |
T |
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