View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6259_low_8 (Length: 470)
Name: NF6259_low_8
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6259_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 1866061 - 1865618
Alignment:
| Q |
19 |
ataatcatccaatacaccagtcaaagaaggagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1866061 |
ataatcatccaatacaccagtcaaagaaggagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaa |
1865962 |
T |
|
| Q |
119 |
caattgaaaaatgggtcacattaatccacataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865961 |
caattgaaaaatgggtcacattaatccacataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaattt |
1865862 |
T |
|
| Q |
219 |
ctagacaatagttcattagaagaagtctttgtatgatccagaattgctccattcatagaacgtgagttaggttcaacattagtgattggtgtaacagatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1865861 |
ctagacaatagttcattagaagaagtctttgtatgatccagaattgctccattcacagaacgtgagttaggttcaacattagtgattggtgtaacatatg |
1865762 |
T |
|
| Q |
319 |
catctccgatatttggattaa-ccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccca |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865761 |
catctccgatatttggattaacccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccca |
1865662 |
T |
|
| Q |
418 |
actgattccttgttgtagactcatgtttgtattttgagtattat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865661 |
actgattccttgttgtagactcatgtttgtattttgagtattat |
1865618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 318 - 461
Target Start/End: Complemental strand, 1865510 - 1865366
Alignment:
| Q |
318 |
gcatctccgatatttggattaaccccg-caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
416 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1865510 |
gcatctccgatatttggattaacctctacagcttttccatcaatgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccc |
1865411 |
T |
|
| Q |
417 |
aactgattccttgttgtagactcatgtttgtattttgagtattat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865410 |
cactgattccttgttgtagactcatgtttgtattttgagtattat |
1865366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 458
Target Start/End: Original strand, 35440700 - 35440813
Alignment:
| Q |
345 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgccccccaactgattccttgttgtagactcatgtt |
444 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||| |||||||||||| |||||||||| |||| ||| | | ||||||||||||| | || |||||| |
|
|
| T |
35440700 |
caacatttccatgagcaccaaacatgtgaggagaataacttgaatatccaggttttgatgtgttcatcccaccattgattccttgttgcacacccatgtt |
35440799 |
T |
|
| Q |
445 |
tgtattttgagtat |
458 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
35440800 |
tgtgttatgagtat |
35440813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 35440916 - 35440960
Alignment:
| Q |
345 |
caacttttccatcagcaccaaacatgagaggagaagaacttgaat |
389 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
35440916 |
caacttttccatcagcaccaaacatgtgaggagaaaaacttgaat |
35440960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University