View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6259_low_9 (Length: 469)

Name: NF6259_low_9
Description: NF6259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6259_low_9
NF6259_low_9
[»] chr5 (16 HSPs)
chr5 (19-469)||(8643347-8643798)
chr5 (120-469)||(8635921-8636280)
chr5 (187-311)||(8527857-8527982)
chr5 (187-310)||(8640449-8640573)
chr5 (120-259)||(8677342-8677482)
chr5 (238-330)||(9002262-9002354)
chr5 (221-320)||(9075307-9075406)
chr5 (19-98)||(8677481-8677561)
chr5 (240-333)||(8420392-8420485)
chr5 (187-304)||(8534438-8534558)
chr5 (238-314)||(8549071-8549148)
chr5 (19-65)||(8636291-8636337)
chr5 (426-469)||(8545351-8545394)
chr5 (400-469)||(8640251-8640317)
chr5 (437-469)||(8549193-8549225)
chr5 (285-317)||(27458082-27458114)
[»] chr4 (1 HSPs)
chr4 (187-311)||(9442024-9442149)
[»] chr7 (3 HSPs)
chr7 (238-413)||(48362758-48362933)
chr7 (238-415)||(35777264-35777444)
chr7 (22-105)||(35777467-35777550)
[»] chr1 (3 HSPs)
chr1 (187-278)||(5129819-5129911)
chr1 (252-305)||(26324948-26325001)
chr1 (75-113)||(26324397-26324435)
[»] chr8 (2 HSPs)
chr8 (414-469)||(44438654-44438709)
chr8 (258-324)||(44438492-44438558)


Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 8643798 - 8643347
Alignment:
Q  19 aaatgaagttctttccttgtctcaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagtct 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8643798 aaatgaagttctttccttgtcacaacaagttctttgagatttggaattacacgttcttcatcatcttatggtgacttgattaatatattttcctcagcct 8643699  T
Q  119 aatggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggc 218  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643698 gatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggc 8643599  T
Q  219 acttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8643598 acttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaaaaaaatgaagatcttgaatgatgacttgac 8643499  T
Q  319 aagtaccctcctccttctgtgagaggcttttgacg-aagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattat 417  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643498 aagtaccctcctccttctgtgagaggcttttgatgaaagagtacaactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaattat 8643399  T
Q  418 catatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 469  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8643398 catatttagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttt 8643347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 120 - 469
Target Start/End: Complemental strand, 8636280 - 8635921
Alignment:
Q  120 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 219  Q
    |||| ||||||||||  ||||||||  ||| ||| || |||| |||||||||||||||||||| ||||| | | |||||||| || |||||||||||| |    
T  8636280 atggtgaagaattcggcgatgagcccatatcttaagagaagtgcgtctcttttcacattgatggggatactgtaacccttgcttaatacaattttaggta 8636181  T
Q  220 c-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgac 318  Q
    | ||||| ||||||| ||  |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| || ||| |    
T  8636180 cattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaaatgaagatcttgaatgacgatttggc 8636081  T
Q  319 aagtaccctcctccttctgtga-gaggcttttga-----cgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcaca 412  Q
    |||| | ||||||||||   ||  ||||||||||      |||||||| ||||||||| ||||| ||||||||||  ||||||| |||||||||||||||    
T  8636080 aagtgctctcctccttcgaggacaaggcttttgatgaagagaagagtacaactaaaaacaaggaattttcatacagcaggaaggtttatgctaaatcaca 8635981  T
Q  413 attatcatattt---agaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 469  Q
    ||||| ||||||   |||||| ||||||||||||||||||||||||||||||||||||||    
T  8635980 attatgatatttgaaagaaaaaaaatgcatatctcattttaggatgcaaatgatgtcttt 8635921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 8527982 - 8527857
Alignment:
Q  187 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 285  Q
    ||||||||||| ||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||||||||| |||||||  ||    
T  8527982 tattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatattaaattgcat 8527883  T
Q  286 gaagaaaatgaagatcttgaatgatg 311  Q
    |||||| |||||||||||||||||||    
T  8527882 gaagaagatgaagatcttgaatgatg 8527857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 8640573 - 8640449
Alignment:
Q  187 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 285  Q
    |||| |||||| ||| |||||||||||||||||| |||||||| || | ||| |||  ||||||||||||||||||||||||||||| ||||||||   |    
T  8640573 tattttgacccctgcttactacaattttaggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatttaaattgcgt 8640474  T
Q  286 gaagaaaatgaagatcttgaatgat 310  Q
    |||||||||||||||||||||||||    
T  8640473 gaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 8677482 - 8677342
Alignment:
Q  120 atggggaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttaggca 219  Q
    |||| |||||||| | ||| |||||  ||||| | ||||||||||||||||||||| |||||| | ||||||||| || | | ||||||||||||||| |    
T  8677482 atggtgaagaatttggtgacgagcccatatatgaagaaaagtacgtctcttttcactttgatgggaatattctgatccgtccttactacaattttaggaa 8677383  T
Q  220 -cttacttaggctcttttttgtaatattggtgttattttat 259  Q
      |||||| |||||| |||||||||||||||||||||||||    
T  8677382 tgttacttgggctctgttttgtaatattggtgttattttat 8677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 9002354 - 9002262
Alignment:
Q  238 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcct 330  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||   ||||||||||||||||||||||||| |||||||| | |||||||||    
T  9002354 tgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatgacgacttgactattaccctcct 9002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 9075307 - 9075406
Alignment:
Q  221 ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaa 320  Q
    |||||||| || | || ||||||| || |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||| ||||    
T  9075307 ttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgtcttaacaa 9075406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 8677561 - 8677481
Alignment:
Q  19 aaatgaagttctttccttgtctcaacaagttct-ttgagatttggaattacacgttcttcatcatcttatggtgacttgat 98  Q
    ||||||||||||||||||||| |||||| ||   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  8677561 aaatgaagttctttccttgtcacaacaaatttgattgagatttggaattacacattcttcatcatcttatggtgacttgat 8677481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 8420485 - 8420392
Alignment:
Q  240 taatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctcct 333  Q
    ||||| |||||||||||||||||||| |||||| ||  |||  |  ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8420485 taatactggtgttattttatataggtttgcaaagttagaatcgtgcgaagaaaataaagatcttgaatgatgacttgacaagtatcctcctcct 8420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 8534558 - 8534438
Alignment:
Q  187 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaa--ttttaaattat 283  Q
    ||||||||||||||| || |||||||||||| |  |||||||| ||   |  |||||||||||||||||||||||||||||| ||||  |||||| ||      
T  8534558 tattctgacccttgcttattacaattttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaattttttaatttgc 8534459  T
Q  284 atgaagaaaatgaagatcttg 304  Q
    |||||||||||||||||||||    
T  8534458 atgaagaaaatgaagatcttg 8534438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 8549071 - 8549148
Alignment:
Q  238 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgact 314  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || |||||||  |||||||||||||||||||    
T  8549071 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 8549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 8636337 - 8636291
Alignment:
Q  19 aaatgaagttctttccttgtctcaacaagttctttgagatttggaat 65  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||    
T  8636337 aaatgaagttctttccttgtctcaacaaactgtttgagatttggaat 8636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 8545351 - 8545394
Alignment:
Q  426 gaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 469  Q
    ||||| |||| || ||||||||||||||||||||||||||||||    
T  8545351 gaaaaaaaatacaaatctcattttaggatgcaaatgatgtcttt 8545394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 8640317 - 8640251
Alignment:
Q  400 atgctaaatcacaattatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 469  Q
    ||||||||||| |||||| ||||||  ||||   ||||||||||||||||||||||||||  ||||||||    
T  8640317 atgctaaatcagaattatgatatttcaaaaa---atgcatatctcattttaggatgcaaacaatgtcttt 8640251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 8549193 - 8549225
Alignment:
Q  437 catatctcattttaggatgcaaatgatgtcttt 469  Q
    |||||||| ||||||||||||||||||||||||    
T  8549193 catatctctttttaggatgcaaatgatgtcttt 8549225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 27458082 - 27458114
Alignment:
Q  285 tgaagaaaatgaagatcttgaatgatgacttga 317  Q
    ||||||||||||||||||||||||| |||||||    
T  27458082 tgaagaaaatgaagatcttgaatgacgacttga 27458114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 9442149 - 9442024
Alignment:
Q  187 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaaattatat 285  Q
    ||||||||||||||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  9442149 tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaaatattaaattacat 9442050  T
Q  286 gaagaaaatgaagatcttgaatgatg 311  Q
    ||||||||||||||||||||||||||    
T  9442049 gaagaaaatgaagatcttgaatgatg 9442024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 413
Target Start/End: Original strand, 48362758 - 48362933
Alignment:
Q  238 tgtaatattggtgttattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctcctccttctg 337  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||  ||||||| |||| || |||| | |    
T  48362758 tgtaatattcgtgttattt-atataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgacaaataccttcttcctccgg 48362856  T
Q  338 t-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaa 413  Q
    | | ||||| ||||  |||||||| |||| | |||| ||| ||| ||||||   || ||||||||| ||||||||||    
T  48362857 tggtgaggcctttggtgaagagtacaactgataagagggaatttccatacactgggcagggttatgttaaatcacaa 48362933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 415
Target Start/End: Complemental strand, 35777444 - 35777264
Alignment:
Q  238 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtaccctc-ctccttc 335  Q
    |||||||||||||||||||| |||||  ||||||| ||||||| |  |  ||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgacttgacaagtatcctctctccttc 35777345  T
Q  336 tgt-gagaggcttttgacgaagagtataactaaaaagaaggatttttcatacaaaaggaagggttatgctaaatcacaatt 415  Q
     || | || ||||||| ||||||||| |||||  | |||| | ||| ||||||  ||| | || |||||||||||||||||    
T  35777344 ggtggtgacgcttttggcgaagagtacaactattatgaagtaatttccatacagtaggcatggctatgctaaatcacaatt 35777264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 35777550 - 35777467
Alignment:
Q  22 tgaagttctttccttgtctcaacaagttctttgagatttgg-aattacacgttcttcatcatcttatggtgacttgattaatata 105  Q
    ||||||||||| |||| ||||| || || ||||||| |||| || || ||||||||||||||||||| |||||||||| ||||||    
T  35777550 tgaagttcttttcttggctcaagaatttgtttgagacttggtaagtatacgttcttcatcatcttat-gtgacttgataaatata 35777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 5129911 - 5129819
Alignment:
Q  187 tattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtgtgcaaattttaa 278  Q
    ||||||||| | ||| || ||||||||||||||| ||| ||||||  | ||  ||||||||||| ||||||||||||||||||||||||||||    
T  5129911 tattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaaattttaa 5129819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 26324948 - 26325001
Alignment:
Q  252 tattttatataggtgtgcaaattttaaattatatgaagaaaatgaagatcttga 305  Q
    ||||||||||||||||||||| || || ||  ||||||||||||||||||||||    
T  26324948 tattttatataggtgtgcaaaattgaatttgcatgaagaaaatgaagatcttga 26325001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 26324397 - 26324435
Alignment:
Q  75 ttcatcatcttatggtgacttgattaatatattttcctc 113  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctc 26324435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 469
Target Start/End: Original strand, 44438654 - 44438709
Alignment:
Q  414 ttatcatatttagaaaagaaatgcatatctcattttaggatgcaaatgatgtcttt 469  Q
    |||| ||||||| |||| |||| || |||||||||||||| |||||||||||||||    
T  44438654 ttatgatatttaaaaaaaaaatacacatctcattttaggaggcaaatgatgtcttt 44438709  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 44438492 - 44438558
Alignment:
Q  258 atataggtgtgcaaattttaaattatatgaagaaaatgaagatcttgaatgatgacttgacaagtac 324  Q
    |||||||| |||||||||||||||    ||| ||| |||||||| | ||||||||||||||||||||    
T  44438492 atataggtctgcaaattttaaattgcgagaaaaaagtgaagatcgtaaatgatgacttgacaagtac 44438558  T

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