View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6260_high_2 (Length: 430)
Name: NF6260_high_2
Description: NF6260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6260_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 26528259 - 26527872
Alignment:
| Q |
18 |
aaataaataaattgacctttttgttgttttatttatgaatatgtgaaacactgtgattatagtttataatatattgaaatagcaaacatatctataaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26528259 |
aaataaataaattgacctttttgttgttttctttatgaatatgtgaaacactgtgattatagtttataatatattgaaatagcaaacatatctataaatg |
26528160 |
T |
|
| Q |
118 |
tattttctattagaaattttatgaattaaattaaaaataataatatgcattggtctcaacg--ataagagatctaaactcctcttaaataagatctaacc |
215 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26528159 |
tcttt---------------atgaattaaattaaaaaaaataatatgcatcggtctcacagtgataagagatttaaactcctcttaaataagatctaact |
26528075 |
T |
|
| Q |
216 |
gatttgagttggtttgatatcgtagacgtgaaaccttatagcgtatttttccttaaaatctcatattcgattatcctcaatattaatttgaatgagctag |
315 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26528074 |
gatttgaattggtttgatatcgtagacatgaaaccttgtagcatgtttttccttaaaatctcatattcgattatcctcaatatcaatttgaatgagctag |
26527975 |
T |
|
| Q |
316 |
tatagcttcctcaaaaaataagtggttacaagttcgatctttgatttttaagtatgaaaaacatttgattggaaaaatgagaactcgctttgtgtgtttc |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26527974 |
tatagcttcttcaaaaaataagtggttacaagttcgatctttgatttttaagtatgaaaaagatttgattggaaaaatgagaactcgctttgtgtgtttc |
26527875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 21029654 - 21029602
Alignment:
| Q |
281 |
ttcgattatcctcaatattaatttgaatgagctagtatagcttcctcaaaaaa |
333 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21029654 |
ttcgattctccccaatactaatttgaatgagctagtttagcttcttcaaaaaa |
21029602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 32654245 - 32654293
Alignment:
| Q |
256 |
gcgtatttttccttaaaatctcatattcgattatcctcaatattaattt |
304 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
32654245 |
gcgtatttttcgtcaaaatctcatattcgattatcttcagtatcaattt |
32654293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University