View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6260_high_4 (Length: 336)
Name: NF6260_high_4
Description: NF6260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6260_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2057051 - 2057364
Alignment:
| Q |
1 |
tttatggacttagacaagcctcgagacactgctttcaaaaattcagttccacaatcttcaaattgggattcaaacaaaattttgcagagaattcgttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2057051 |
tttatggacttagacaagcctcgagacactgctttcaaaaattcagttccacaatcttcaaattgggattcaaacaaaattttgcagagaattcgttatt |
2057150 |
T |
|
| Q |
101 |
taccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgatcaaccaattggttttgcatctatcttggagaattcttgatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2057151 |
taccaatggctcgggtaatagttttgtagcacttcgagttacaacatatgtggatgatcaaccaattgattttgcatctatcttggagaattcttgatta |
2057250 |
T |
|
| Q |
201 |
cttggaagtcaaggaaacaatcaacaaagtcacgttcatcgactgaggctgagtatcgtgctttagcagttgtaaccaatgagttgttatggattaaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2057251 |
cttggaagtcaaggaaacaatcaacaaagtcac-----------gaggctgagtatcgtgctttagcagttgtaaccaatgagttgttatggattaaaca |
2057339 |
T |
|
| Q |
301 |
gctccttagagcttttgaaattgat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2057340 |
gctccttagagcttttgaaattgat |
2057364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University