View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6260_high_9 (Length: 248)
Name: NF6260_high_9
Description: NF6260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6260_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 3213923 - 3214063
Alignment:
| Q |
18 |
aaacaatacaaatcaaagtcgatgttttcgtgagcatgtatgtgatgatcgatgttggtagaatgaaaagaaaaggcacaaagcaaatttgtgagagagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3213923 |
aaacaatacaaatcaaagtcgatgttttcgtgagcatgtatgtgatgatcgatgttggtagaatgaaaagaaaaagcacaaagcaaatttgtgagagagg |
3214022 |
T |
|
| Q |
118 |
tgaagattaaaattaggagtagaaaatataaggtttgtaaa |
158 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3214023 |
tgaatattaaaattaggagtagaaaatataaggtttgtaaa |
3214063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 3214150 - 3214217
Alignment:
| Q |
157 |
aaaacagcaattttcatagaaattttgggtgtaactagatgttttaagggtgtaactagaaagagcca |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3214150 |
aaaacaacaattttcatagaaattttgggtgtaactagatgttttaagggtgtaactagaaatagcca |
3214217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 11065701 - 11065631
Alignment:
| Q |
86 |
agaaaaggcacaaagcaaatttgtgagagaggtgaagattaaaattaggagtagaaaatataaggtttgtaaa |
158 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||||| ||| |||||||| | |||||| | |||||||||| |
|
|
| T |
11065701 |
agaaaaggcataaag-aaattt-tgagagaggtgaagagtaatattaggagaataaaatacagggtttgtaaa |
11065631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 29945064 - 29945004
Alignment:
| Q |
68 |
gatgttggtagaatgaaaagaaaaggcacaaagcaaatttgtgagagaggtgaagattaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
|
|
| T |
29945064 |
gatgttggtagaatgaaaagaaaaagcaccaagcaaatttgtgaaagaggtgaagattaaa |
29945004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 30901807 - 30901765
Alignment:
| Q |
176 |
aaattttgggtgtaactagatgttttaagggtgtaactagaaa |
218 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
30901807 |
aaattttgggtgtaaccagatattttaagggtgtaactagaaa |
30901765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University