View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6260_low_3 (Length: 358)
Name: NF6260_low_3
Description: NF6260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6260_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 354
Target Start/End: Complemental strand, 5546156 - 5545860
Alignment:
| Q |
58 |
ttattagttgtgttggaatgtaaacgtataattttatttgactacaatatttattctcaccttttttaattaatcatcaatagttgtccatgtttcttgt |
157 |
Q |
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| T |
5546156 |
ttattagttatgttggaatgtaaacatgtaattttatttgactacaatatttattctcaccttttttaattaatcatcaacagttgtccatgtttcttgt |
5546057 |
T |
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| Q |
158 |
gtgaagttatttgtcggcttcgtgtagatagagccattgatactcaattcaatcgaactttgcatgcttgtgcttttaaattatttgaaagtacttaatt |
257 |
Q |
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| T |
5546056 |
gtgaagttatttgtcggcttcgtgtagatagagccattgatactcaattcaatcgaactttgcatgcttgtgcttttaaattatttgaaagtacttaatt |
5545957 |
T |
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| Q |
258 |
tctatcctttgtatgaacaaaattatcaaaaatttcaagagtattttttcatgagcacaaagtttcaagactatatggaatgcgaatcatactacag |
354 |
Q |
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| T |
5545956 |
tttatcctttgtatcaacaaaattatcaaaattttcaagagtattttttcatgagcacaaagtttcaagactgtatggaatactaatcatattacag |
5545860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 5545367 - 5545279
Alignment:
| Q |
117 |
ccttttttaattaatcatcaatagttgtccatgtttcttgtgt---gaagttatttgtcggcttcgtgtagatagagccattgatactc |
202 |
Q |
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| T |
5545367 |
ccttttttaattaatcttcaacagttgtccatgtttcttgtgtgcagaagttatttatcggattcatgcacataaagccattgatactc |
5545279 |
T |
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