View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6260_low_7 (Length: 276)

Name: NF6260_low_7
Description: NF6260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6260_low_7
NF6260_low_7
[»] chr4 (3 HSPs)
chr4 (103-275)||(42225645-42225817)
chr4 (194-255)||(13508055-13508116)
chr4 (191-255)||(13507131-13507194)
[»] chr7 (2 HSPs)
chr7 (193-275)||(28557139-28557221)
chr7 (183-275)||(707736-707828)
[»] chr1 (3 HSPs)
chr1 (191-275)||(7384470-7384554)
chr1 (191-256)||(23573193-23573258)
chr1 (191-275)||(9419380-9419464)
[»] chr8 (1 HSPs)
chr8 (178-275)||(17707034-17707131)
[»] chr2 (1 HSPs)
chr2 (191-275)||(31559117-31559201)
[»] scaffold0140 (1 HSPs)
scaffold0140 (191-256)||(35887-35952)
[»] chr6 (1 HSPs)
chr6 (191-275)||(1134480-1134564)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 103 - 275
Target Start/End: Original strand, 42225645 - 42225817
Alignment:
Q  103 tcaggtctacttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcccctggaaaaacccaccacctcatggcaatgtcttctc 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  42225645 tcaggtcttcttcatccctgttttttcttcttatccctaccatttttctcatctatttgcgcctctggaaaaacccaccacctcatggcgatgtcttctc 42225744  T
Q  203 attccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  42225745 attccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctc 42225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 13508116 - 13508055
Alignment:
Q  194 tgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 255  Q
    ||||||||||||||||| ||||||||| ||||||| | |||| |||||||||||||||||||    
T  13508116 tgtcttctcattccattactaattcatattcaattaagttgcctatatgtggttgcaacaaa 13508055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 13507131 - 13507194
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaa 255  Q
    ||||||||||| |||||||| ||||||||||||||| || | ||| ||| |||||||||||||||    
T  13507131 caatgtcttcttattccattactaattcatcttcaa-ttgagtgcctatttgtggttgcaacaaa 13507194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 28557221 - 28557139
Alignment:
Q  193 atgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    |||||||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  28557221 atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 28557139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 707828 - 707736
Alignment:
Q  183 cctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    |||| |||||| |||||||| ||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| | ||||| ||||||    
T  707828 cctcgtggcaaggtcttctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctc 707736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 7384554 - 7384470
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| ||||||||  ||||||||||| |||| ||||| ||||||    
T  7384554 caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctc 7384470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 23573193 - 23573258
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 256  Q
    |||||||| ||||||||||  | ||||||||||||| | || ||| ||| ||||||||||||||||    
T  23573193 caatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaa 23573258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 9419464 - 9419380
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    |||||||||||||||||||| || | ||||| |||||| | || | ||||  ||||| ||||||||| |||| ||||| ||||||    
T  9419464 caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctc 9419380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 17707131 - 17707034
Alignment:
Q  178 caccacctcatggcaatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    |||| |||| ||||||||||||||| ||||||||||||| |||| |||||| |||| | |||||||||  ||||||||||||| | ||||| ||||||    
T  17707131 caccccctcgtggcaatgtcttctccttccattgctaatacatcatcaattgaattacctatatgtgggcgcaacaaaatcataaggatgttcatctc 17707034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 31559201 - 31559117
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    |||||||||||||||||||| || | ||||| |||||| | |||| ||||||||||||||||||||| |||| ||||| ||||||    
T  31559201 caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctc 31559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 35887 - 35952
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaa 256  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| ||| ||||||||||||||||    
T  35887 caatgtcttctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaa 35952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 1134480 - 1134564
Alignment:
Q  191 caatgtcttctcattccattgctaattcatcttcaatttaattgcttatatgtggttgcaacaaaatcatgatgatgtccatctc 275  Q
    ||||||||||||||||||||  | | ||||| |||| | | |||| ||||||||||||||| ||||| |||| ||||| ||||||    
T  1134480 caatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctc 1134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University