View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6261_high_1 (Length: 580)

Name: NF6261_high_1
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6261_high_1
NF6261_high_1
[»] chr5 (4 HSPs)
chr5 (15-301)||(32002274-32002561)
chr5 (300-555)||(32001760-32002015)
chr5 (47-193)||(43275741-43275889)
chr5 (221-268)||(43275945-43275992)
[»] chr1 (4 HSPs)
chr1 (47-193)||(28486044-28486192)
chr1 (47-193)||(46090366-46090514)
chr1 (219-268)||(28486224-28486273)
chr1 (219-268)||(46090568-46090617)
[»] chr8 (2 HSPs)
chr8 (47-193)||(3194310-3194464)
chr8 (219-268)||(3194214-3194263)
[»] chr4 (2 HSPs)
chr4 (76-193)||(39834420-39834539)
chr4 (219-268)||(39834593-39834642)
[»] chr3 (3 HSPs)
chr3 (114-189)||(25227079-25227152)
chr3 (219-268)||(25227203-25227252)
chr3 (47-121)||(25226968-25227042)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 32002561 - 32002274
Alignment:
Q  15 catagggccaccgtgccaaatttatctttttaacatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatcac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32002561 catagggccaccgtgccaaatttatctttttaacatacacagtctggatgcattaaattattattatcattccagcactttacttatattcaaaaatcac 32002462  T
Q  115 atacatagttaataagcatgctcttggaatctagtctacgtgccaaattggagaagacataaaagatattatgctccttta-actacatgttgaaaaagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32002461 atacatagttaataagcatgctcttggaatctagtctacgtgccaaattggagaagacataaaagatattatgctcctttacactacatgttgaaaaagt 32002362  T
Q  214 tgagcatatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagatagatttagatactctttcatgtataaagataata 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32002361 tgagcatatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagatagatttagatactctttcatgtgtaaagataata 32002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 300 - 555
Target Start/End: Complemental strand, 32002015 - 32001760
Alignment:
Q  300 tataagtttttaggaatgatattcggatatcaaaacttttgatagcaaatattattgtgttctttgtttttatgtatttgaaattcatgtgagttgtatt 399  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  32002015 tataagtttttaggaatgatattcggatatcaaa-cttttaatagcaaatattattttgttctttgtttttatgtatttgaaattcatgtcagttgtatt 32001917  T
Q  400 ttgatgttcaattaatacaataagtttatatattattttcttagttaagaccctatcttattctcaaatgcaatatagaacactttttaaaaataagaag 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32001916 ttgatgttcaattaatacaataagtttatatattattttcttagttaagaccctatcttattctcaaatgcaatatagaacacaatttaaaaataagaag 32001817  T
Q  500 catcatatttgaattccaattatacacacaatcttgcatgtgtc-aatcaagaatgt 555  Q
    |||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||    
T  32001816 catcatatttaaattccaattatgcacacaatctggcatgtgtcaaatcaagaatgt 32001760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 43275741 - 43275889
Alignment:
Q  47 acatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatca----catacatagttaataagcatgctcttgga 142  Q
    |||||||||  |||||| ||||||| |||||||||||||||| ||||||  |||||||||| |||||    |||| ||||||||||| ||||||||||||    
T  43275741 acatacacaacctggatacattaaactattattatcattccaacactttgcttatattcaagaatcacatgcatagatagttaataatcatgctcttgga 43275840  T
Q  143 atctagtctacgtgccaaattggagaagacataaaagatattatgctcctt 193  Q
    |||| | | |||| |||||||| |||||||||  |||||||||||||||||    
T  43275841 atcttg-ccacgttccaaattgtagaagacat-gaagatattatgctcctt 43275889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 43275945 - 43275992
Alignment:
Q  221 atatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  43275945 atatgacgcaaatattgcttgctgctccttcttttgattgcacagata 43275992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 28486044 - 28486192
Alignment:
Q  47 acatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatca----catacatagttaataagcatgctcttgga 142  Q
    |||||||||| |||||| ||||||| ||||||||||| |||| ||||||  |||||||||| |||||    |||| ||||||||||| ||||||||||||    
T  28486044 acatacacagcctggatacattaaactattattatcagtccaacactttgcttatattcaagaatcacatgcatagatagttaataatcatgctcttgga 28486143  T
Q  143 atctagtctacgtgccaaattggagaagacataaaagatattatgctcctt 193  Q
    |||| | | ||||||||||||| ||||||||| ||||||||||||||||||    
T  28486144 atcttg-ccacgtgccaaattgtagaagacat-aaagatattatgctcctt 28486192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 46090366 - 46090514
Alignment:
Q  47 acatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatca----catacatagttaataagcatgctcttgga 142  Q
    |||||||||  |||||| ||||||| |||||||||||||||| ||||||  |||||||||| |||||    |||| ||||||||||| ||||||||||||    
T  46090366 acatacacaacctggatacattaaactattattatcattccaacactttgcttatattcaagaatcacatgcatagatagttaataatcatgctcttgga 46090465  T
Q  143 atctagtctacgtgccaaattggagaagacataaaagatattatgctcctt 193  Q
     ||| | | ||||||||||||| ||||||||| ||||||||||||||||||    
T  46090466 gtcttg-ccacgtgccaaattgtagaagacat-aaagatattatgctcctt 46090514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 28486224 - 28486273
Alignment:
Q  219 atatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  28486224 atatatgacgcaaatattgcttgctgctcctgcttttgatcgcacagata 28486273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 46090568 - 46090617
Alignment:
Q  219 atatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  46090568 atatatgacgcaaatattgcttgctgctcctgcttttgagtgcacagata 46090617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 3194464 - 3194310
Alignment:
Q  47 acatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatcacataca----------tagttaataagcatgct 136  Q
    |||||||||  |||||| ||||||| |||||||||||||||| || |||  |||||||||| |||||||| ||          |||||||||| ||||||    
T  3194464 acatacacaacctggatacattaaactattattatcattccaacaatttgcttatattcaagaatcacattcacatgcatagatagttaataatcatgct 3194365  T
Q  137 cttggaatctagtctacgtgccaaattggagaagacataaaagatattatgctcctt 193  Q
    |||||||||| | | ||||||||||||| ||||||||| ||||||||||||||||||    
T  3194364 cttggaatcttg-ccacgtgccaaattgtagaagacat-aaagatattatgctcctt 3194310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3194263 - 3194214
Alignment:
Q  219 atatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  3194263 atatataacgcaaatattgcttgctgctcctgcttttgattgcacagata 3194214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 39834420 - 39834539
Alignment:
Q  76 tattatcattccagcactttagttatattcaaaaatca----catacatagttaataagcatgctcttggaatctagtctacgtgccaaattggagaaga 171  Q
    ||||||||||||| ||||||  ||||||| || |||||    |||| ||||||||||| ||||||||| |||||| | | ||||||||||||| ||||||    
T  39834420 tattatcattccaacactttgcttatatttaagaatcacatgcatagatagttaataatcatgctctttgaatcttg-cgacgtgccaaattgtagaaga 39834518  T
Q  172 cataaaagatattatgctcctt 193  Q
    ||| ||||||||||||||||||    
T  39834519 cat-aaagatattatgctcctt 39834539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 39834593 - 39834642
Alignment:
Q  219 atatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  39834593 atatatgacgcaaatattgcttgctgctcctgcttttgattgcacagata 39834642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 25227079 - 25227152
Alignment:
Q  114 catacatagttaataagcatgctcttggaatctagtctacgtgccaaattggagaagacataaaagatattatgct 189  Q
    |||| ||||||||||| |||||||||||||||| | | ||||||||||||| ||||||||| ||||||||||||||    
T  25227079 cataaatagttaataatcatgctcttggaatcttg-ccacgtgccaaattgtagaagacat-aaagatattatgct 25227152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 25227203 - 25227252
Alignment:
Q  219 atatatgacgcaaatgctgcttgctgctcctgcttttgattgcacagata 268  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||    
T  25227203 atatatgacgcaaacattgcttgctgctcctgcttttgattgcacagata 25227252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 25226968 - 25227042
Alignment:
Q  47 acatacacagtctggatgcattaaattattattatcattccagcactttagttatattcaaaaatcacatacata 121  Q
    |||||||||  || ||| ||||||| |||||||||||||||| ||||||  |||||||||| |||||||| ||||    
T  25226968 acatacacaacctagatacattaaactattattatcattccaacactttgcttatattcaagaatcacatgcata 25227042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University