View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_high_13 (Length: 249)
Name: NF6261_high_13
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 56069678 - 56069810
Alignment:
| Q |
104 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
203 |
Q |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaat----taaagtgt |
56069773 |
T |
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| Q |
204 |
gcttaccagtttctgccatttgtggtacacctctgtg |
240 |
Q |
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| T |
56069774 |
gcttaccagtttctgccatttgtggtacacctctgtg |
56069810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 56069542 - 56069644
Alignment:
| Q |
1 |
gttgtagccaatacccaagcagtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataat |
100 |
Q |
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| T |
56069542 |
gttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataat |
56069641 |
T |
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| Q |
101 |
tgt |
103 |
Q |
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||| |
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| T |
56069642 |
tgt |
56069644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38398797 - 38398695
Alignment:
| Q |
1 |
gttgtagccaatacccaagcagtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccataat |
100 |
Q |
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| T |
38398797 |
gttgtagccaagacctaagacatgccaagatcggttcagcgggaacgtgcgtttccagaatgttataagaccaggtggcagtgttcctaacttccatagt |
38398698 |
T |
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| Q |
101 |
tgt |
103 |
Q |
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||| |
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| T |
38398697 |
tgt |
38398695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 38398594 - 38398508
Alignment:
| Q |
149 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtg |
240 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagat----taaagtgt-cttaccagcttctgccaattgtggtacacctctgtg |
38398508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 10171075 - 10171013
Alignment:
| Q |
34 |
gttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttcca |
96 |
Q |
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| T |
10171075 |
gttcagtgggaaagtgcgtttccagaaggttatgagacctggtggcagtgttcctaacttcca |
10171013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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