View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_high_16 (Length: 239)
Name: NF6261_high_16
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 6842296 - 6842066
Alignment:
| Q |
9 |
acatcatcaattttgtgtgtgttgacgccacaagctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaac |
108 |
Q |
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| T |
6842296 |
acatcttcaattttgtgtgtgttgatgccacaagctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaac |
6842197 |
T |
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| Q |
109 |
tccaagctccaacgctagcaccatgtactagaacaaaatgcttctgtttttggttcattttcaattcagacattattatggttttcttctatgcaacttt |
208 |
Q |
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| T |
6842196 |
tccaagctccaacgctaacaccatgtactagaacaaaatgcttctgtttttggttcattttcaattcagacattattatggttttcttctatgcaacttt |
6842097 |
T |
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| Q |
209 |
tggtacttctttgctaaatatagaaagatgt |
239 |
Q |
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| T |
6842096 |
tggtacttctttgctaaatatagaaagatgt |
6842066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 6833047 - 6832912
Alignment:
| Q |
27 |
gtgttgacgccacaagctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaactccaagctccaacgctag |
126 |
Q |
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| T |
6833047 |
gtgttgatgccactagctgcaagatcaagtgctgtgaccttgtgaccagatgattctaaacgtggcttaagcttgtaccaattccaggcacccatgccag |
6832948 |
T |
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| Q |
127 |
caccatgtactagaacaaaatgcttctgtttttggt |
162 |
Q |
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| T |
6832947 |
aaccatgtaccagaacaaaatgcatttgtttttggt |
6832912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 33760661 - 33760737
Alignment:
| Q |
76 |
cagattctaactgtggtttaagcttgtaccaactccaagctccaacgctagcaccatgtactagaacaaaatgcttc |
152 |
Q |
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| T |
33760661 |
cagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgcttc |
33760737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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