View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6261_high_21 (Length: 232)

Name: NF6261_high_21
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6261_high_21
NF6261_high_21
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-191)||(290804-290994)
[»] chr4 (3 HSPs)
chr4 (5-191)||(2610753-2610939)
chr4 (1-191)||(297079-297267)
chr4 (16-88)||(13137001-13137073)
[»] chr5 (4 HSPs)
chr5 (1-124)||(32097608-32097731)
chr5 (119-189)||(32094072-32094142)
chr5 (33-88)||(7961267-7961322)
chr5 (33-70)||(7465162-7465199)
[»] chr2 (3 HSPs)
chr2 (3-137)||(32609788-32609922)
chr2 (33-88)||(841671-841726)
chr2 (31-88)||(40427047-40427104)
[»] chr3 (3 HSPs)
chr3 (3-184)||(34291779-34291960)
chr3 (36-88)||(14788788-14788840)
chr3 (16-75)||(25845582-25845641)
[»] chr1 (4 HSPs)
chr1 (3-184)||(38274181-38274362)
chr1 (1-156)||(48610893-48611048)
chr1 (39-100)||(22583319-22583380)
chr1 (18-88)||(9484766-9484836)
[»] chr7 (3 HSPs)
chr7 (3-159)||(16559941-16560097)
chr7 (3-159)||(16605565-16605721)
chr7 (33-88)||(11884287-11884342)
[»] chr6 (2 HSPs)
chr6 (33-88)||(32533187-32533242)
chr6 (24-90)||(19153444-19153510)


Alignment Details
Target: scaffold0003 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 290994 - 290804
Alignment:
Q  1 caacaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataat 100  Q
    |||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||| |||||||| |||||| |||||| |||||| |||||||||||    
T  290994 caacaatctgatatgttgaacattttttgcctttaaaaatcctgttgtttctttccttccaaatttctcacaccgtcgcaagccaaatcaactgcataat 290895  T
Q  101 agaccgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagcaaacaccc 191  Q
    |||| || |||||| || |||||||||||||||||||  ||| |||||||||||||| | |||||||||||||||||||||||| ||||||    
T  290894 agacagcagccccttgggacaattgccaccaacaaaactaaactgatttaggtaatctgccggcacattagggattaccgagcagacaccc 290804  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 2610753 - 2610939
Alignment:
Q  5 aatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatagac 104  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||| ||||||| ||||| ||||||| |  ||||||||||||    
T  2610753 aatctgatatgttgaacattctttgctgttaaaaatcctgttgtttctttccttccaaattttccacaccgtcgcataccaaatcagatgcataatagac 2610852  T
Q  105 cgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagcaaacaccc 191  Q
     ||| ||||| ||||||||||||| |||||||| |||| ||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  2610853 agccaccccttggaacaattgccaacaacaaaaccaaactgattgaggtaatccgccggcacattagggattaccgagcatacaccc 2610939  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 297267 - 297079
Alignment:
Q  1 caacaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataat 100  Q
    ||||||||||||||||||||||||||||||  |||||| |  |||||||| ||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  297267 caacaatctgatatgttgaacattctttgcttttaaaa-tcctgttgtttttttcctttcaaatttcccacacggtcgcaaatcaaatcaactgcataat 297169  T
Q  101 agaccgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagcaaacaccc 191  Q
    ||||  | | |||| |  | ||||||||||||| ||| |||| |||||||||||||| | ||||||||||  |||||||||||| ||||||    
T  297168 agacaacagtcccttgagataattgccaccaac-aaaccaaactgatttaggtaatctgccggcacattatagattaccgagcagacaccc 297079  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13137073 - 13137001
Alignment:
Q  16 ttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    |||| ||||||||  ||||||||||| |||| |||||||| ||||| |||||||||||  | |||||||||||    
T  13137073 ttgagcattcttttgcgttaaaaattctgttatttctttcttttcatatttcccacactcttgcaaaccaaat 13137001  T

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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32097731 - 32097608
Alignment:
Q  1 caacaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||    
T  32097731 caacaatctgatatgttgaacattctttgccgttaaagattttgttgtttctttccttccaaattttccacaccgtcgcaaaccaaatcaactgcataat 32097632  T
Q  101 agaccgccgcccctcggaacaatt 124  Q
    |||||||||||||| |||||||||    
T  32097631 agaccgccgccccttggaacaatt 32097608  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 32094142 - 32094072
Alignment:
Q  119 acaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagcaaacac 189  Q
    ||||||| || ||||||||||||| |||||||| ||||||||||||| ||||| |||||| || |||||||    
T  32094142 acaattgtcatcaacaaaatcaaactgatttagataatccgtcggcatattagagattactgaacaaacac 32094072  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 7961267 - 7961322
Alignment:
Q  33 ttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||| |||||||||||||||| || ||||||||||   |||||||||||||    
T  7961267 ttaaaaattatgttgtttctttccttccatatttcccacatagtcgcaaaccaaat 7961322  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 7465199 - 7465162
Alignment:
Q  33 ttaaaaattttgttgtttctttcctttcaaatttccca 70  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  7465199 ttaaaaattttgttgttcctttccttccaaatttccca 7465162  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 32609922 - 32609788
Alignment:
Q  3 acaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatag 102  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||||||| |||||||| |||||| ||||| ||||||| |||||||||||||    
T  32609922 acaatctgatatgttgaacattctttaccgttaaaaatcatgttgtttctttccttccaaatttctcacaccgtcgcataccaaatcaactgcataatag 32609823  T
Q  103 accgccgcccctcggaacaattgccaccaacaaaa 137  Q
    || | |||||||  |||||||||||||||||||||    
T  32609822 acagtcgccccttagaacaattgccaccaacaaaa 32609788  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 841671 - 841726
Alignment:
Q  33 ttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||| ||||||||| |||||||| |||||||||||||   |||||||||||||    
T  841671 ttaaaaaatttgttgttcctttccttccaaatttcccacaaagtcgcaaaccaaat 841726  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 40427047 - 40427104
Alignment:
Q  31 cgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||||| |||| || |||||||| ||||||| |||||| |||||| |||||||    
T  40427047 cgttaaaaattatgttattcctttccttccaaattttccacacaatcgcacaccaaat 40427104  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 34291960 - 34291779
Alignment:
Q  3 acaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatag 102  Q
    |||||||||||||||||||||||||| || ||||||||  |||| ||||||||||| ||||||||||||||| || || ||||||| |||||||||||||    
T  34291960 acaatctgatatgttgaacattcttttcctttaaaaatcatgttatttctttccttccaaatttcccacaccgtcacataccaaatcaactgcataatag 34291861  T
Q  103 accgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagca 184  Q
    ||  ||||| || |||||||  ||||||||||||  |||| || || ||||||||||| |||| ||||||||| ||||||||    
T  34291860 acaaccgcctcttggaacaaaagccaccaacaaagccaaactggttgaggtaatccgttggcaaattagggatgaccgagca 34291779  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 14788840 - 14788788
Alignment:
Q  36 aaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||||| ||||||||||| || |||||||||||| | |||||||||||    
T  14788840 aaaattttgttatttctttccttccagatttcccacaccctagcaaaccaaat 14788788  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 25845641 - 25845582
Alignment:
Q  16 ttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacacca 75  Q
    ||||||| |||||||| ||||| | | ||||||||||||| || ||||||||||||||||    
T  25845641 ttgaacaatctttgcctttaaataatatgttgtttctttctttccaaatttcccacacca 25845582  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 38274181 - 38274362
Alignment:
Q  3 acaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatag 102  Q
    |||||||||||||||||||||||||| || ||||||||  |||| ||||||||||| ||||||||||||||| || || |||| || |||||||||||||    
T  38274181 acaatctgatatgttgaacattcttttcctttaaaaatcctgttatttctttccttccaaatttcccacaccgtcacataccacatcaactgcataatag 38274280  T
Q  103 accgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccgtcggcacattagggattaccgagca 184  Q
    ||  || ||  | |||||||  ||||||||||||  |||| || || ||||||||||| |||| | ||||||| ||||||||    
T  38274281 acaaccaccttttggaacaaaagccaccaacaaagccaaactggttgaggtaatccgttggcaaactagggatgaccgagca 38274362  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 48610893 - 48611048
Alignment:
Q  1 caacaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataat 100  Q
    |||||||||||||||| |||||||||||| | || |||||| || | |||||||| || || ||||||| |||  | ||| ||||||| || |||| |||    
T  48610893 caacaatctgatatgtcgaacattctttgtcattgaaaattctgctatttctttctttccatatttcccccacagtagcataccaaatcaaatgcaaaat 48610992  T
Q  101 agaccgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaat 156  Q
    |||  | ||| |||  || |||||||||||||||||| |||| ||| | |||||||    
T  48610993 agattgtcgcaccttagagcaattgccaccaacaaaaccaaactgagtgaggtaat 48611048  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 22583319 - 22583380
Alignment:
Q  39 attttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataat 100  Q
    |||||||||||||||||||| |||||||||||||  || ||||||||||  | |||||||||    
T  22583319 attttgttgtttctttccttccaaatttcccacatgatagcaaaccaaagcacctgcataat 22583380  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 9484836 - 9484766
Alignment:
Q  18 gaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||||| || || || || ||||| |||||||| |||||||||||||||||  | |||||||||||    
T  9484836 gaacattctttaccattgaatatcttgttatttctttcttttcaaatttcccacacactagcaaaccaaat 9484766  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 16560097 - 16559941
Alignment:
Q  3 acaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatag 102  Q
    |||||||||||||||||||||||||| || || || |   |||| |||||||| || || |||||||||||| | ||||||||||| |  ||||||||||    
T  16560097 acaatctgatatgttgaacattcttttccattgaataacctgttatttctttctttccatatttcccacaccgtagcaaaccaaatgagatgcataatag 16559998  T
Q  103 accgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccg 159  Q
    |  ||||| |||  ||| | || |||| |||||||  | ||||||||| ||||||||    
T  16559997 attgccgcaccttagaatagtttccacgaacaaaactatattgatttaagtaatccg 16559941  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 16605565 - 16605721
Alignment:
Q  3 acaatctgatatgttgaacattctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaattaactgcataatag 102  Q
    |||||||||||||||||||||||||| || || || |   |||| |||||||| || || |||||||||||| | ||||||||||| |  ||||||||||    
T  16605565 acaatctgatatgttgaacattcttttccattgaataacctgttatttctttctttccatatttcccacaccgtagcaaaccaaatgagatgcataatag 16605664  T
Q  103 accgccgcccctcggaacaattgccaccaacaaaatcaaattgatttaggtaatccg 159  Q
    |  ||||| |||  ||| | || |||| |||||||  | ||||||||| ||||||||    
T  16605665 attgccgcaccttagaatagtttccacgaacaaaactatattgatttaagtaatccg 16605721  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 11884342 - 11884287
Alignment:
Q  33 ttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||||||||||| |||||||| ||||||||||| ||  |||||||||||||    
T  11884342 ttaaaaattttgttgttcctttccttccaaatttcccatacagtcgcaaaccaaat 11884287  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 32533187 - 32533242
Alignment:
Q  33 ttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaat 88  Q
    ||||||||||||||||| | |||||| |||||||||||||   |||||||||||||    
T  32533187 ttaaaaattttgttgttccgttccttccaaatttcccacatagtcgcaaaccaaat 32533242  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 19153444 - 19153510
Alignment:
Q  24 tctttgccgttaaaaattttgttgtttctttcctttcaaatttcccacaccatcgcaaaccaaatta 90  Q
    ||||| ||||| |||||  |||| |||||||| ||  |||||||||||||||| |||||||||||||    
T  19153444 tctttaccgttgaaaatcctgttatttctttctttctaaatttcccacaccatagcaaaccaaatta 19153510  T

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