View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6261_high_6 (Length: 410)
Name: NF6261_high_6
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 1209577 - 1209198
Alignment:
| Q |
17 |
aaaacaacattgatcttgtgtcactcaacattatatttgaatgagcctaagggaagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1209577 |
aaaacaacattgatcttgtgtcactcaacattatatatgaatgagcccaaagcaagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttga |
1209478 |
T |
|
| Q |
117 |
gtttattttatgtgttaacctttgatttttagaaaaggagatttcgataatccgaagtttcatcaagggagataagtaaattatagttaagaattgttcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||| |||| |||| |
|
|
| T |
1209477 |
gtttattttatgtgttaacctttgatttttaagaaaggagattttgataatcagaagtttcatca--gaagataagtaaattatagttaaaaattattcc |
1209380 |
T |
|
| Q |
217 |
accaaaaacctaatttgaatcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctc |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1209379 |
accaaaaacctaatttgagtcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctc |
1209280 |
T |
|
| Q |
317 |
a-nnnnnnncctcttgagaggaagttcatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagta |
397 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1209279 |
attttttttcctcttgagaggaagtccatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagta |
1209198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University