View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_low_10 (Length: 389)
Name: NF6261_low_10
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 38937751 - 38937390
Alignment:
| Q |
18 |
taaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937751 |
taaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttg |
38937652 |
T |
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| Q |
118 |
actaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattggactgagttaacttctttgcaactcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||||||| |
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| T |
38937651 |
actaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattggaccaagttaacttccttgcaactcc |
38937552 |
T |
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| Q |
218 |
nnnnnnntaggttaacaggaatgattcctccacaaattggcttgttgnnnnnnnttaaaattctttttctctacaaaaatcttttctccggtcccattcc |
317 |
Q |
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||| ||||| |||| | | |||||||| |||||||| || ||| ||| | |||| ||||| ||| | || || ||||| || || |
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| T |
38937551 |
aaaacaatagtttaactggaaagctacctccacagattggcttactgaaaaaaattataatcttacttctgtacaataatatgttgtctggtccaatccc |
38937452 |
T |
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| Q |
318 |
tgaagagtttggaaacttaaaggaaatgacagagttagacctttcaggaaaccatttctctg |
379 |
Q |
| |
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||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
38937451 |
tgatgagataggaaacttgaaggtaatgacagggttagacctttcaggaaaccacttctctg |
38937390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 39305201 - 39305562
Alignment:
| Q |
18 |
taaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305201 |
taaagttccttctgagcttggcctatgcacaaatctaactttcttgagcttagcagtaaataacctgacaggttctttgcctttgtcattagcaaatttg |
39305300 |
T |
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| Q |
118 |
actaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattgatctctaattggactgagttaacttctttgcaactcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||||||| |
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| T |
39305301 |
actaaactatcagaactaggattatcggataattctttttctggtcaaatttcagcttcattggtatctaattggaccaagttaacttccttgcaactcc |
39305400 |
T |
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| Q |
218 |
nnnnnnntaggttaacaggaatgattcctccacaaattggcttgttgnnnnnnnttaaaattctttttctctacaaaaatcttttctccggtcccattcc |
317 |
Q |
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||| ||||| |||| | | |||||||| |||||||| || ||| ||| | |||| ||||| ||| | || || ||||| || || |
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| T |
39305401 |
aaaacaatagtttaactggaaagctacctccacagattggcttactgaaaaaaattataatcttacttctgtacaataatatgttgtctggtccaatccc |
39305500 |
T |
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| Q |
318 |
tgaagagtttggaaacttaaaggaaatgacagagttagacctttcaggaaaccatttctctg |
379 |
Q |
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||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
39305501 |
tgatgagataggaaacttgaaggtaatgacagggttagacctttcaggaaaccacttctctg |
39305562 |
T |
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