View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6261_low_12 (Length: 301)
Name: NF6261_low_12
Description: NF6261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6261_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1209221 - 1209001
Alignment:
| Q |
1 |
atatttagcaagtgttacatagtagtatataaccaccgtcaat----ataagactaattatcgttgtctgcaatagaacattcgaattttttatacataa |
96 |
Q |
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| T |
1209221 |
atatttagcaagtgttacatagtagtatataaccactgtcaatcgttataagactaattatcgttgtctgcaatagaacattcgaattttttatacataa |
1209122 |
T |
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| Q |
97 |
aatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacactaatttagtgctt---taaaatgtttgt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1209121 |
aatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacactaatttagtgctttaataaaatgtttgt |
1209022 |
T |
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| Q |
194 |
tggtcatgttacattctagtt |
214 |
Q |
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||||||| ||||||||||||| |
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| T |
1209021 |
tggtcatattacattctagtt |
1209001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 1208933 - 1208856
Alignment:
| Q |
214 |
tagtttaaccaatcaaagaactcccttattgtgtgtaggtctaacctatgagttgttcattgctttgatccttttcat |
291 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1208933 |
tagttgaaccaatcaaagaactcctttattgtgtgtaggtctaacctatgatgtgttcattgctttgatccttttcat |
1208856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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